Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11i01
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0517 + 18482902-18482986,18483074-18483291,18483888-184840... 38 0.008
10_08_0515 - 18473545-18473791,18473921-18474156,18474299-184744... 38 0.011
09_05_0003 + 20016534-20016703,20017679-20017915,20018585-200186... 37 0.015
10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796... 36 0.034
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174... 35 0.059
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 34 0.10
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007... 34 0.14
03_02_0068 + 5390004-5390425,5390517-5390949 33 0.31
03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059 32 0.55
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 31 1.3
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849... 31 1.3
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848... 31 1.3
07_01_0233 - 1703602-1705623 29 2.9
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897... 29 2.9
01_05_0459 - 22435374-22435397,22435517-22435691,22435881-224359... 29 2.9
12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776 28 9.0
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 28 9.0
>10_08_0517 +
18482902-18482986,18483074-18483291,18483888-18484049,
18484132-18484367,18484455-18484710
Length = 318
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/108 (23%), Positives = 45/108 (41%)
Frame = +2
Query: 245 VSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGKSRPP 424
V G ++ + GKG + IW ++ Q+ + + VA D GYG S P
Sbjct: 16 VRGLTLHVAQAGKGELGTVVFLHGFPEIWYSWRHQMLAVAAAGYRAVAPDWRGYGLSDQP 75
Query: 425 MKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYP 568
+ + Y+ + + AL +PK ++G G + A ++P
Sbjct: 76 PEP-EAAVYDDLIEDLLAILDALAVPKAFLVGKDFGAMPAYDFALRHP 122
>10_08_0515 -
18473545-18473791,18473921-18474156,18474299-18474460,
18474731-18474948,18475048-18475120
Length = 311
Score = 37.5 bits (83), Expect = 0.011
Identities = 27/118 (22%), Positives = 46/118 (38%)
Frame = +2
Query: 245 VSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGKSRPP 424
+ G ++ +GKG + +W ++ Q+ F +A D PGYG S PP
Sbjct: 12 IRGLKLHIAHIGKGEAATLLFVHGFPEVWYSWRHQMIAAAAAGFRAIALDFPGYGLSEPP 71
Query: 425 MKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYPETVQKLVIWG 598
+ D + +L+IPK ++ G A +P+ V +V G
Sbjct: 72 ADLTQASWQGLMND-LLAILDSLSIPKVFLVAKDFGVKPAYDLALCHPDRVCGIVSLG 128
>09_05_0003 +
20016534-20016703,20017679-20017915,20018585-20018631,
20018932-20019050,20019128-20019288,20019379-20019488,
20019571-20019670,20019701-20019743,20020375-20020503
Length = 371
Score = 37.1 bits (82), Expect = 0.015
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 374 FTLVAWDPPGYG-KSRPPMKQFDVDFYEKDADYAFN-FMKALNIPKYSILGWSDGGITGI 547
F ++A D G+G SRP + E +F + KA N+ + +LG S GG
Sbjct: 127 FRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAA 186
Query: 548 IHAAKYPETVQKLVIWGSNSF 610
+A ++PE VQ L++ G F
Sbjct: 187 KYALQHPEHVQHLILVGPAGF 207
>10_08_0516 +
18478743-18478830,18478940-18479319,18479406-18479641,
18480280-18480538
Length = 320
Score = 35.9 bits (79), Expect = 0.034
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Frame = +2
Query: 245 VSGCNINYVKVGKGSHNL-----ICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYG 409
+ G N++ +VGKG +L + IW ++ Q+ + VA D GYG
Sbjct: 12 IRGLNLHIAQVGKGEISLYELGTVVFLHGFPEIWYSWRHQMLAAAAAGYRAVAPDWRGYG 71
Query: 410 KSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYPETVQKLV 589
S P +Q + + + AD + AL +P ++G G + A ++P + +
Sbjct: 72 LSGQPPEQEEATWDDLVAD-VLAILDALAVPGAFLVGKDFGAMPAYDFALRHPARTRGVA 130
Query: 590 IWG 598
G
Sbjct: 131 CLG 133
>06_01_0228 -
1736373-1736721,1739915-1740120,1740513-1740844,
1740935-1741499
Length = 483
Score = 35.1 bits (77), Expect = 0.059
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +2
Query: 329 WTDYK-PQIEGIDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPK 505
WT+ P K + + A D G+G+S P E + ++ + K
Sbjct: 209 WTETVFPAFSEAAKGRYRMFAVDLLGFGRSPKPADSL-YTLREHVEMIERSVLQRYRLRK 267
Query: 506 YSILGWSDGGITGIIHAAKYPETVQKLVIWGSNSFMLPHE 625
+ ++ S G + + A KYP+ VQ L + F +P E
Sbjct: 268 FHVVAHSLGSVLALALAVKYPDAVQSLTLLAPPYFPVPEE 307
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 2/128 (1%)
Frame = +2
Query: 212 STAVPKEEKVKVSGCNINYVKVGKGSHNL--ICLPGALGTIWTDYKPQIEGIDKNDFTLV 385
+ A + V+ +G +++ + G GS + +W ++ Q+ + + V
Sbjct: 3 AAAAVRHRTVEANGISMHVAEAGPGSGTAPAVLFVHGFPELWYSWRHQMGHLAARGYRCV 62
Query: 386 AWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKY 565
A D GYG + P + + D + AL +P+ ++G G I
Sbjct: 63 APDLRGYGGTTAPPEHTSYTIFHLVGDLV-ALLDALELPQVFVVGHDWGAIVSWNLCLLR 121
Query: 566 PETVQKLV 589
P+ V+ LV
Sbjct: 122 PDRVRALV 129
>07_03_1312 -
25699811-25699912,25700410-25700548,25700655-25700722,
25700803-25700895,25706303-25706902
Length = 333
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 482 MKALNIPKYSILGWSDGGITGIIHAAKYPETVQKLVI 592
M A+ + ++ ++G S GG G AA YP+ V+++V+
Sbjct: 128 MDAIGVARFGLVGVSYGGFVGYRMAAMYPDAVERVVL 164
>03_02_0068 + 5390004-5390425,5390517-5390949
Length = 284
Score = 32.7 bits (71), Expect = 0.31
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Frame = +2
Query: 260 INYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGKSRPPMKQFD 439
+N VG G ++ L GT + + + + + D +V +D G P FD
Sbjct: 26 LNVRVVGSGER-VVVLSHGFGTDQSAWSRVLPYLTR-DHRVVLYDLVCAGSVNPD--HFD 81
Query: 440 VDFYEK-DA--DYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYPETVQKLVIWGSN 604
Y+ DA D + AL IP+ + +G S + GI+ + + P+ KLV+ G++
Sbjct: 82 FRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGAS 139
>03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059
Length = 338
Score = 31.9 bits (69), Expect = 0.55
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
Frame = +2
Query: 212 STAVPKEEKVKVSGCNINYVKVGK--GSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLV 385
+ AV + V+ +G +I+ + G G + +W ++ Q+E + F +
Sbjct: 7 AAAVIRHRTVEANGISIHVAEAGGEGGDGAAVLFLHGFPELWYSWRHQMEHLAGRGFRCL 66
Query: 386 AWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKY 565
A D GYG + P + + D + AL + K ++G G I
Sbjct: 67 APDLRGYGDTDAPPEIESYSAFHVVGDLV-ALLDALGLAKVFVVGHDWGAIIAWYMCLFR 125
Query: 566 PETVQKLV 589
P+ V LV
Sbjct: 126 PDRVTALV 133
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 482 MKALNIPKYSILGWSDGGITGIIHAAKYPETVQKLVI 592
M A+ + ++ ++G S GG AA YPE V + V+
Sbjct: 135 MDAIGVRRFDVVGVSYGGFVAYRMAAMYPEAVDRAVM 171
>01_01_1078 +
8489872-8490168,8490280-8490462,8490667-8490908,
8490988-8491240
Length = 324
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 MSTAVPKEEKVKV-SGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLV 385
M+ A + +V+V SG ++ + G + L +W ++ Q+ + F V
Sbjct: 1 MAAAAVRHREVEVASGVRLHVAESGPEGGPVALLVHGFPELWYSWRHQMRALAARGFRAV 60
Query: 386 AWDPPGYGKSRPP 424
A D GYG S P
Sbjct: 61 APDLRGYGDSDAP 73
>01_01_1077 +
8485655-8486134,8486423-8486554,8487725-8487966,
8488254-8488500
Length = 366
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 MSTAVPKEEKVKV-SGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLV 385
M+ A + V+V SG ++ + G + L +W ++ Q+ + F V
Sbjct: 1 MAAAEVRHRTVEVASGVRLHVAEAGPEDGPAVLLVHGFPELWYSWRHQMRALAARGFRAV 60
Query: 386 AWDPPGYGKSRPP 424
A D GYG S P
Sbjct: 61 APDLRGYGDSDAP 73
>07_01_0233 - 1703602-1705623
Length = 673
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = +2
Query: 284 GSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDA 463
G HNL + G IW DY + ID VA P K P+ D +
Sbjct: 194 GFHNLSLISGEAMQIWIDYDGGAKQID------VALAPFKMAKPTKPLLSMPYDLSSVIS 247
Query: 464 DYAFNFMKA---LNIPKYSILGWS 526
D A+ + A L + ILGWS
Sbjct: 248 DVAYVGLSAATGLAGSSHYILGWS 271
>06_01_1093 -
8970996-8971667,8971756-8971902,8971982-8972118,
8972343-8972612,8972731-8972868,8974965-8975394
Length = 597
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 308 PGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGYGK 412
PG LGT+W+ + Q G + AW PG G+
Sbjct: 15 PGQLGTLWSTLEDQRGGAREVPLLSSAWGLPGGGR 49
>01_05_0459 -
22435374-22435397,22435517-22435691,22435881-22435974,
22436103-22436267,22436566-22436687,22437224-22437306,
22437473-22437591,22437890-22437935
Length = 275
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +2
Query: 359 IDKNDFTLVAWDPPGYGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKY---SILGWSD 529
+ K + +D G G+S +F Y K+AD + + LN KY +I+G S
Sbjct: 67 LTKKGVGIFRFDFSGNGESEG---EFQYGNYRKEADDLHSVISHLNQEKYDVKAIVGHSK 123
Query: 530 GGITGIIHAAKYPETVQKLVIWGSNSFMLPHELE 631
GG +++A+ Y + + V+ S F L +E
Sbjct: 124 GGDVVVLYASIYDDV--RTVVNLSGRFHLEKGIE 155
>12_02_1247 - 27322920-27323175,27323252-27323490,27324309-27324776
Length = 320
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +2
Query: 209 MSTAVPKEEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVA 388
M V + V+G +++ + G + L +W ++ Q+ + F +A
Sbjct: 1 MGGEVVRHWNADVNGISLHVAEQGPADGPPVLLIHGFPELWLSWRHQMAALAARGFRALA 60
Query: 389 WDPPGYGKSRPP 424
D GYG S P
Sbjct: 61 PDLRGYGDSTVP 72
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 398 PGYGKSRPPMKQFDVDFYEKDAD-YAFNFMKALNIPKYSILGWSDGGIT 541
P G+S P+K+ D Y KD F MKA + + ++G S GG++
Sbjct: 48 PQNGQSCSPLKEIDDVGYSKDCGALPFELMKA-RVAERLMVGVSHGGVS 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,476,855
Number of Sequences: 37544
Number of extensions: 342986
Number of successful extensions: 763
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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