Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11h23
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    30   0.22 
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    28   0.87 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   3.5  

>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 389 NVDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAK 532
           N++ LL H  +++   I+   E LDA+E   L   R+ ++AE+  RA+
Sbjct: 148 NLNNLLDHWLRHIRDVIEDNREELDAIEDPQL---RRLKLAELNTRAQ 192


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 578 SLC--ILRDQWPTTLVSALLLISFQLCVVV*SPLDPHFPE 465
           S+C  ILRDQW   L  + +L+S    +   +P DP  PE
Sbjct: 83  SICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 398 QLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQ 541
           QL    A  +ERQ  +  +   ALE+  +    QQRIA+ +L  +Q Q
Sbjct: 360 QLAAQQAAEMERQRMAAQQHQQALEAIQMAQAEQQRIAQEQLAQQQFQ 407


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 395  DQLLQHVAQNVERQIDSEIERLDALESGDLEAI--RQQRIAEMKLRAKQKQEW 547
            D ++ H      R+ID +   LDA+     EAI  R +R  E +L AK ++ W
Sbjct: 869  DPIVIHAYLKKRREIDEQSTALDAVVPTGDEAIDRRNRRRLEQEL-AKSQKNW 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,893
Number of Sequences: 5004
Number of extensions: 44169
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)