Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11h23
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-9|AAB53824.1| 208|Caenorhabditis elegans Hypothetical pr... 62 4e-10
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical pr... 31 0.60
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 29 3.2
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 29 3.2
U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam ... 28 4.2
Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical pr... 28 5.6
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 5.6
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 5.6
AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical ... 27 7.4
AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical ... 27 7.4
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 27 9.8
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 27 9.8
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 27 9.8
>U00048-9|AAB53824.1| 208|Caenorhabditis elegans Hypothetical
protein C05D11.3 protein.
Length = 208
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = +2
Query: 395 DQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHGEYT 574
+QLL+ AQ VE QID E+ +L+ LE DLE IR+QR+ +MK K + E L+ GHG+Y
Sbjct: 11 EQLLR-AAQVVEEQIDQEMNKLENLEEDDLEVIRRQRMEQMKKAQKDRIEMLSHGHGKYE 69
Query: 575 EI 580
E+
Sbjct: 70 EV 71
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
protein C03D6.4 protein.
Length = 1390
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 371 LVITMANVDQLLQHVAQNVERQIDSEIERLDALESGD--LEAIRQQRIAEMKLRAKQKQE 544
L++++ + QH + ++ +ID ++E + +E G+ LE +R E +R + +
Sbjct: 604 LILSIERMSDRTQHTVKEMDFEIDEKMELVAGVEDGNQVLEKLRNMSETEKLMRFNKLET 663
Query: 545 WLAIGHGEYTE 577
+ +G+Y E
Sbjct: 664 AADLLNGKYEE 674
>Z73102-7|CAA97420.1| 727|Caenorhabditis elegans Hypothetical
protein B0035.6 protein.
Length = 727
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 275 RLHPISLVLITKTIGLYLLQLIV*REAPSTIWLVITMANVDQLLQHVAQNVERQIDSE 448
R P VL+T +I +LL +IV +T+ + N +L+ + QN+E+ D+E
Sbjct: 306 RTKPAENVLLTPSIICFLLNIIVDENVSNTV-----IENCKMILKAIGQNMEQPFDAE 358
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 575 LCILRDQWPTTLVSALLLISFQLCVVV*SPLDP 477
L IL+DQW +L +L+S Q + P DP
Sbjct: 93 LDILKDQWAASLTLRTVLLSIQALMCTPEPKDP 125
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 395 DQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEW 547
D L+++A+ + Q D E R A E ++A+R R+A ++ +K EW
Sbjct: 41 DIALRNIAKFFKEQSDEE--RGHATELMRIQAVRGGRVAMQNIQKPEKDEW 89
>U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam
protein 6, isoform a protein.
Length = 964
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 454 FDFTVNLSLYILGNMLQQLVDVRHCDY*PYCGWC-FPSDNQL 332
F FT++L+L N++Q P WC FPS N +
Sbjct: 25 FSFTISLALLFYPNLVQIFKSTTSIPNIPKVWWCLFPSSNPI 66
>Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical
protein Y48E1B.3 protein.
Length = 360
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 390 FAIVITNHIVDGASLQTISWSK 325
F V +HI+DG QTI W+K
Sbjct: 170 FCAVAISHILDGDKEQTIDWTK 191
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/53 (28%), Positives = 34/53 (64%)
Frame = +2
Query: 386 ANVDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQE 544
A V+++ + ++ R++D+E+ER +A+ SG E I++ + + + K+K+E
Sbjct: 827 ARVEEIPEKATKSF-RELDNELERCEAVHSG--EKIKKVKEPKPPKQPKEKKE 876
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/53 (28%), Positives = 34/53 (64%)
Frame = +2
Query: 386 ANVDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQE 544
A V+++ + ++ R++D+E+ER +A+ SG E I++ + + + K+K+E
Sbjct: 840 ARVEEIPEKATKSF-RELDNELERCEAVHSG--EKIKKVKEPKPPKQPKEKKE 889
>AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical
protein R02F11.3b protein.
Length = 489
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 275 RLHPISLVLITKTIGLYLLQLIV 343
RL P+SL+LI+ +G+ +QLI+
Sbjct: 259 RLEPLSLILISVIMGMASIQLII 281
>AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical
protein R02F11.3a protein.
Length = 467
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 275 RLHPISLVLITKTIGLYLLQLIV 343
RL P+SL+LI+ +G+ +QLI+
Sbjct: 237 RLEPLSLILISVIMGMASIQLII 259
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily assigned
gene nameprotein 177 protein.
Length = 1667
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 419 QNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHGEYTEI 580
QNV +Q S E L E +L R++ + KLR +E++ +G + E+
Sbjct: 1327 QNVRQQNKSVFEVLYDAEDSELTNFRERLLHLRKLRHGDHKEFIPVGATDKVEM 1380
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -1
Query: 390 FAIVITNHIVDGASLQTISWSKYR 319
FA+ +TNH++D A L+ IS SK R
Sbjct: 572 FAVGVTNHVLD-AELEEISGSKDR 594
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -1
Query: 390 FAIVITNHIVDGASLQTISWSKYR 319
FA+ +TNH++D A L+ IS SK R
Sbjct: 572 FAVGVTNHVLD-AELEEISGSKDR 594
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,084,243
Number of Sequences: 27780
Number of extensions: 256235
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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