Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11h22
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    30   0.070
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    24   4.6  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   8.1  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    23   8.1  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    23   8.1  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    23   8.1  

>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 30.3 bits (65), Expect = 0.070
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 11  FYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNY 148
           F +  + +K++   L+    KS   KLH+ +I      MQKNN  +
Sbjct: 49  FLIGQLSRKEMKSMLLTFAGKSNFDKLHNSIIFHILKLMQKNNDTF 94


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 20  SNIKKKKLFRNLINVYHKSTN 82
           +++ +  L  NLIN+ HK +N
Sbjct: 452 AHVSQHSLLSNLINILHKESN 472


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +2

Query: 8   YFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNY 148
           ++  S++     F+ L    +  ++  +HS ++ +F     K N NY
Sbjct: 778 HYDFSSLNVYASFQKLCCDLYYGSDDYIHSPILQVFASCWLKQNSNY 824


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 20  SNIKKKKLFRNLINVYHKSTNSKLHSVLISI--FTDFMQKNNKNY 148
           S++++ + F+N  N   K   S+LH+   SI   TDF+Q  +  Y
Sbjct: 235 SSVRRSQSFKNRRN--GKPRISRLHTSHASIDGLTDFIQSPSSGY 277


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 20  SNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTD 121
           S + KKK  +  ++   + T+S++H+VL++  T+
Sbjct: 120 SEVPKKKYKKIKVDPSARRTSSRMHTVLMAQSTE 153


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +2

Query: 5   MYFYVSNIKKKKLFRNLINVYHKSTNSKLHSVLISIFTDFMQKNNKNYH 151
           +  YV N   K++     NVY   T +    +L   F +    N+ ++H
Sbjct: 176 LQLYVDNKPSKEIVSTYPNVYKMCTKNYYTRLLFPEFPNVYAFNDLSFH 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,126
Number of Sequences: 5004
Number of extensions: 12638
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)