Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11h05
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    45   3e-05
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169...    32   0.19 
01_01_0697 - 5389071-5389487,5390301-5390390,5390472-5390536,539...    30   1.0  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    29   1.8  
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156           27   5.4  
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907...    27   5.4  
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    27   5.4  
05_02_0045 - 5972122-5972274,5974041-5974070,5976206-5977030,597...    27   5.4  
10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899     27   7.2  
03_02_0469 + 8720119-8720199,8720295-8720372,8720496-8720570,872...    27   9.5  
03_01_0086 - 699617-699766,699851-699908,699998-700068,700210-70...    27   9.5  

>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 32/72 (44%)
 Frame = +3

Query: 144 AQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDK 323
           A+    AR L+      RER ++ L                 D  ++WKG+F+  W SDK
Sbjct: 11  AEAAAIARRLASCNGSARERAVRHLLSTFLPA--SAPHLSASDLLKLWKGLFFCFWHSDK 68

Query: 324 PLVQEDLAENIA 359
           PL Q  LA  +A
Sbjct: 69  PLYQSSLATRLA 80


>03_04_0058 -
           16915281-16915313,16915424-16915535,16915585-16916990,
           16919112-16919282
          Length = 573

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
 Frame = +3

Query: 135 AVVAQEIKFARLLSGNENK-VRERVIKTLKKWLQNCFHRGYEFKEDDFTR-VWKGIFYAM 308
           A V Q  +F +L + +  K +    +K   +WLQN  HRG   +  + TR V   +++  
Sbjct: 180 AAVVQTAEFGQLAAESVPKNLHCLTVKLTVEWLQNPKHRGRSEEHRNSTRLVDNNLYHFA 239

Query: 309 WMSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWF 449
             SD  L    +  +     +H  P+ L   ++  +  F  ++T WF
Sbjct: 240 IFSDNVLATSVVVNSTVSNANH--PQQLVFHVVTDRVHFGAMST-WF 283


>01_01_0697 -
           5389071-5389487,5390301-5390390,5390472-5390536,
           5391106-5391176,5391297-5391335,5392938-5393350
          Length = 364

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 354 IAGILDHFPPEHLHHAMLMTKAGFKVLATEWFG 452
           I G+ +H    +LH A L+T  GF V A +W G
Sbjct: 144 IHGLNEH-SGRYLHFAELLTSCGFGVYAMDWIG 175


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 207 IKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSD 320
           +K L ++L+NC     +FKED+F  +    FY   M D
Sbjct: 564 VKDLLRFLRNCRRHAAQFKEDEFPSI-VDHFYPKLMCD 600


>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
          Length = 598

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 341 PSGEYSRHPGSFSTRTSSSCXAYDKGWL 424
           P GE    PG+ S+R      +YD GWL
Sbjct: 336 PDGELRPVPGANSSRAIPYFSSYDDGWL 363


>11_06_0395 +
           23088737-23088823,23090198-23090346,23090570-23090708,
           23090795-23090889,23090967-23091080,23091674-23091803,
           23091931-23092052,23092889-23093007,23093946-23094034,
           23094072-23094245,23094310-23094616,23094726-23095180,
           23095334-23096315,23096381-23097396,23097757-23097792,
           23098065-23098130
          Length = 1359

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 240 FHRGYEFKEDDFTRVW 287
           F +GYEFK+D+  ++W
Sbjct: 669 FPKGYEFKKDEIVKMW 684


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 117 TKKEQVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCF 242
           T  + +A+V   IK   L   +  K    V   LKKW+ NC+
Sbjct: 42  TLNDMMAIVPLMIKMLGLNLKDNAKGLASVYDPLKKWMDNCY 83


>05_02_0045 -
           5972122-5972274,5974041-5974070,5976206-5977030,
           5977110-5977196,5977294-5977395
          Length = 398

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 312 MSDKPLVQEDLAENIAGILDHFP 380
           M+  PL+  D++E + GIL HFP
Sbjct: 70  MATTPLLTSDISEFMEGILYHFP 92


>10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899
          Length = 280

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 180 NENKVRERVIKTLKKWLQNCFHRGYEFKEDD 272
           NE K R ++++  +  +Q CF    E  +DD
Sbjct: 126 NEKKKRTKMVRYTQDQIQYCFANSVELSDDD 156


>03_02_0469 +
           8720119-8720199,8720295-8720372,8720496-8720570,
           8720666-8720796,8720948-8721002,8721107-8721217,
           8721538-8721606,8721687-8721794,8722106-8722174,
           8722266-8722320,8722499-8722701
          Length = 344

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 258 FKEDDFTRVWKGIFYAMWMSDKPLVQEDLAENI 356
           +KE  F   WKG+  A+ M   P +Q  L E +
Sbjct: 182 YKEAGFLGFWKGVVPALIMVSNPAIQFMLYETL 214


>03_01_0086 -
           699617-699766,699851-699908,699998-700068,700210-700286,
           700384-700466,700545-700604,700848-700983,701056-701126,
           701248-701339,701454-701551,701891-702043,702146-702311,
           702457-702885,703076-703157,703245-703504
          Length = 661

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 249 GYEFKEDDFTRVWKG 293
           G+ F EDDF R W+G
Sbjct: 406 GFAFDEDDFCRPWEG 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,114
Number of Sequences: 37544
Number of extensions: 207317
Number of successful extensions: 558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)