Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11h05
         (455 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79775-1|AAC51625.1|  461|Homo sapiens NNP-1/Nop52 protein.            81   2e-15
BC014787-1|AAH14787.2|  466|Homo sapiens RRP1 protein protein.         81   2e-15
BC000380-1|AAH00380.1|  461|Homo sapiens ribosomal RNA processin...    81   2e-15
AP001752-4|BAA95542.1|  461|Homo sapiens NNP-1/Nop52 (NNP-1), no...    81   2e-15
AK223215-1|BAD96935.1|  461|Homo sapiens nucleolar protein NOP52...    81   2e-15
AK223185-1|BAD96905.1|  461|Homo sapiens nucleolar protein NOP52...    81   2e-15
BC028386-1|AAH28386.1|  758|Homo sapiens ribosomal RNA processin...    73   5e-13
BC014005-1|AAH14005.1|  408|Homo sapiens RRP1B protein protein.        73   5e-13

>U79775-1|AAC51625.1|  461|Homo sapiens NNP-1/Nop52 protein.
          Length = 461

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 326
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 327 LVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           L+QE+L   I+ ++  F      H  L  +A ++ +  EW GI
Sbjct: 70  LLQEELGRTISQLVHAFQTTEAQH--LFLQAFWQTMNREWTGI 110


>BC014787-1|AAH14787.2|  466|Homo sapiens RRP1 protein protein.
          Length = 466

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 326
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 15  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 74

Query: 327 LVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           L+QE+L   I+ ++  F      H  L  +A ++ +  EW GI
Sbjct: 75  LLQEELGRTISQLVHAFQTTEAQH--LFLQAFWQTMNREWTGI 115


>BC000380-1|AAH00380.1|  461|Homo sapiens ribosomal RNA processing 1
           homolog (S. cerevisiae) protein.
          Length = 461

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 326
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 327 LVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           L+QE+L   I+ ++  F      H  L  +A ++ +  EW GI
Sbjct: 70  LLQEELGRTISQLVHAFQTTEAQH--LFLQAFWQTMNREWTGI 110


>AP001752-4|BAA95542.1|  461|Homo sapiens NNP-1/Nop52 (NNP-1), novel
           nuclear protein 1 protein.
          Length = 461

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 326
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 327 LVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           L+QE+L   I+ ++  F      H  L  +A ++ +  EW GI
Sbjct: 70  LLQEELGRTISQLVHAFQTTEAQH--LFLQAFWQTMNREWTGI 110


>AK223215-1|BAD96935.1|  461|Homo sapiens nucleolar protein NOP52
           variant protein.
          Length = 461

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 326
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 327 LVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           L+QE+L   I+ ++  F      H  L  +A ++ +  EW GI
Sbjct: 70  LLQEELGRTISQLVHAFQTTEAQH--LFLQAFWQTMNREWTGI 110


>AK223185-1|BAD96905.1|  461|Homo sapiens nucleolar protein NOP52
           variant protein.
          Length = 461

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
 Frame = +3

Query: 150 EIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMWMSDKP 326
           EI+ A+ L+GNE   R+R ++ L+K++     R    F  D+  +VWKG+FY MWM DKP
Sbjct: 10  EIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQDKP 69

Query: 327 LVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           L+QE+L   I+ ++  F      H  L  +A ++ +  EW GI
Sbjct: 70  LLQEELGRTISQLVHAFQTTEAQH--LFLQAFWQTMNREWTGI 110


>BC028386-1|AAH28386.1|  758|Homo sapiens ribosomal RNA processing 1
           homolog B (S. cerevisiae) protein.
          Length = 758

 Score = 72.9 bits (171), Expect = 5e-13
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
 Frame = +3

Query: 135 AVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMW 311
           A+   EI+FA+ L+ +E  +R+R +K L++++     R    F +++  ++WKG+FY MW
Sbjct: 4   AMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMW 63

Query: 312 MSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           + D+PL+QE+LA  IA ++         H  + T   ++ +  EW GI
Sbjct: 64  VQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQT--FWQTMNREWKGI 109


>BC014005-1|AAH14005.1|  408|Homo sapiens RRP1B protein protein.
          Length = 408

 Score = 72.9 bits (171), Expect = 5e-13
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
 Frame = +3

Query: 135 AVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYE-FKEDDFTRVWKGIFYAMW 311
           A+   EI+FA+ L+ +E  +R+R +K L++++     R    F +++  ++WKG+FY MW
Sbjct: 4   AMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMW 63

Query: 312 MSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGI 455
           + D+PL+QE+LA  IA ++         H  + T   ++ +  EW GI
Sbjct: 64  VQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQT--FWQTMNREWKGI 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,050,500
Number of Sequences: 237096
Number of extensions: 1181995
Number of successful extensions: 2144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2138
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)