Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11h05
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical p...    65   3e-11
AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical...    33   0.075
Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical pr...    33   0.099
U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical
           protein C47E12.7 protein.
          Length = 397

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 33/105 (31%), Positives = 58/105 (55%)
 Frame = +3

Query: 132 VAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMW 311
           V + + E+ FA+ L+  E   R+R ++ L  W+++   + + F + D  R+ KG+ Y MW
Sbjct: 3   VDLASVEVVFAQKLACGEPATRQRALRVLHDWIRDQSAKKH-FDDADLMRLCKGLHYVMW 61

Query: 312 MSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEW 446
           M DK ++QE+LA+ I G+++ F  E     +       K L+ EW
Sbjct: 62  MQDKMILQEELADRIGGLINIFTSE--EEKVRFVACFLKSLSKEW 104


>AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical
           protein Y50E8A.6 protein.
          Length = 609

 Score = 33.5 bits (73), Expect = 0.075
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 192 VRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGI 296
           V E+ I+ + K +   F + YE K +D T +W GI
Sbjct: 355 VTEKEIQYILKEMNRAFEKEYEIKREDVTSIWSGI 389


>Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical
           protein T03D8.6 protein.
          Length = 578

 Score = 33.1 bits (72), Expect = 0.099
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 300 YAMWMSDKPLVQEDLAENIAGILDHFPPEH-LHHAMLMTKAGFKVLAT----EWFG 452
           Y  W+ D+   +   ++N  GI  + PP+H   H   M + G  V AT     WFG
Sbjct: 355 YTQWVIDRMTDKAQSSKNYGGIAQYVPPDHGTSHVSAMDQYGNGVSATTTINRWFG 410


>U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical
           protein F46F11.6 protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -2

Query: 232 WSHFFSVLITRSRTLFSFPDNKRANFISWATTATCSFL 119
           W H    +     T   FPD +    +SW  +  CS L
Sbjct: 16  WKHLPREIRRNILTRLPFPDKQNMMLVSWENSQICSTL 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,806,298
Number of Sequences: 27780
Number of extensions: 182557
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)