Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11g17
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   1.9  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   2.5  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   2.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   4.4  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   4.4  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   5.8  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   7.7  

>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 339 NKNTYLSPPNKMLRHRNYPKNVRGPLTPASKLVLHPS 229
           NK   ++PP   L+H  +   V GP T A      PS
Sbjct: 34  NKTVTITPPKHGLKHSRHKNRVNGPRTFAFDECFAPS 70


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 193 KHNYRLPLRVNLLFITINTIPLLVVRHVTSV 101
           ++N RLP   N ++    TI +L V HVT V
Sbjct: 107 RNNERLPYLCNAIWSFYTTIVILAVLHVTHV 137


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 287 IPKMYEVL*HPQVNLYYILPATRQYFCKPHHEAQLSSP 174
           + K++ VL HP +N    L    +YF K  H+     P
Sbjct: 210 VTKVFNVLDHPDINDSTCLTKEARYFVKEQHKKLSRKP 247


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 241  ITSFPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRH 113
            I +FPQ  NI  +H TK N    L V   F   +T  L  V+H
Sbjct: 1029 INTFPQLFNILTTHATKDN----LTVKDCFPKDDTQQLAAVKH 1067


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 134 SITRCSSRNISCNNIFVQVFTCCLH*GRNCTVAVWWKRQ 18
           S ++CS R  +C  I+    TCC+  G +C  +  W  Q
Sbjct: 22  SASQCSPRYGTCGGIYYDGPTCCVV-GSSCIYSNPWYSQ 59


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 646 FANTSPSKSSASLNQRPDPNHGSL*RSGEKLSKHNIKMSTNDY---LIIRDHEDYSIRNV 476
           + +T    S+  +  R D    S   SGEK +K NI  STN Y    I +  E +   + 
Sbjct: 524 YYSTDTDVSANVMGNRHDEVVFSDTASGEKNTKLNIDESTNYYNTDSIDKVGEPFDEISS 583

Query: 475 GYNVIING 452
           GY+ ++NG
Sbjct: 584 GYDDLMNG 591


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 195 RSTTIVSLYE*ICYLLLSILFHY 127
           R T+++SL   +CYL+  +L+H+
Sbjct: 163 RHTSVISLIA-LCYLVFIVLYHF 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,209
Number of Sequences: 5004
Number of extensions: 61873
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)