Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11g17
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    31   0.85 
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    30   2.0  
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    29   3.4  
04_03_0782 + 19600510-19600771,19601192-19601293,19601439-196015...    29   4.5  

>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 411 LCFHLYHQREPDLAPFIITLYPTFRIL*SSWSRMI 515
           L  H+ HQ EPD+   I+   PT+  L   W R++
Sbjct: 499 LLLHI-HQNEPDIGKSILVFLPTYYALEQQWIRLL 532


>04_01_0126 -
           1340540-1341376,1341437-1341900,1342105-1342156,
           1342225-1342799,1343596-1343703,1345823-1346155,
           1346783-1349306
          Length = 1630

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/64 (31%), Positives = 39/64 (60%)
 Frame = -2

Query: 232 FPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVVCIKV 53
           +  +  +F S++ KH+ +L   V +L + I +  +L++  V  + +++ SKYLR+   KV
Sbjct: 571 YNMESTVFRSYS-KHHRKL---VVVLAVPIASTVILLI-FVGVMFMLWKSKYLRIDATKV 625

Query: 52  GTAL 41
           GTA+
Sbjct: 626 GTAV 629


>05_06_0102 -
           25589011-25589181,25589269-25589496,25589589-25589933,
           25590406-25590777,25590957-25591049,25591150-25591401,
           25592019-25593224
          Length = 888

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 243 QVYLRVLKDLVHFWDNYDGAAFY 311
           Q+    L  L+HFWD +DG   Y
Sbjct: 561 QIACSTLDGLIHFWDPFDGLLMY 583


>04_03_0782 +
           19600510-19600771,19601192-19601293,19601439-19601534,
           19601625-19601717,19601814-19601893,19602000-19602281,
           19602624-19602751,19603134-19603503
          Length = 470

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  SLPPHCDSAVPTLMQTTRKYLDKYIITTDV 110
           SL   CD+ +  + + T +++DKY +T DV
Sbjct: 261 SLSSACDTVMTQVARETSRFVDKYDVTLDV 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,993,624
Number of Sequences: 37544
Number of extensions: 353959
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)