Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11g16
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 29 0.59
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.8
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 1.8
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 3.1
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 5.5
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 25 9.6
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 25 9.6
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 9.6
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 324 YTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPI 473
YT P L CD+G+K T I F +IL ++ + I FL V+PI
Sbjct: 150 YTYP--LACDKGKKTLSTSIAIEFFQILLKDTFPLLD--DWIAFLKVSPI 195
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 292 IYQNLNMVRPSTHYPTFYFATEERKRI 372
I+ L +V+PS +P FY +EE+ +I
Sbjct: 1450 IHYVLKLVKPSKFFPLFYSDSEEKGKI 1476
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 426 WFNTSKMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKI 551
W T K +HV+ + +PV AL+ + +Y+RT + I
Sbjct: 892 WLTTLKKPQSIHVSGRFPQVSSPVNTALSNSLLYIRTLSRVI 933
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 546 KIVSLATKGTRYEVVNELFTSHQNIIFGQPEMLQK 650
K++S KGTR+EV + + T I++ + L+K
Sbjct: 283 KVLSATWKGTRFEVQSVIRTVSDKILYDKAVPLEK 317
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 146 STTTKTENVIIKKNSFRASSMFSHSKEVSREN 241
ST TEN ++KN+F+ + F+ + ++ N
Sbjct: 106 STRKDTENESLRKNNFKRRTQFAFTGRATKSN 137
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 437 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 348
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 437 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 348
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 437 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 348
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 437 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 348
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 546 KIVSLATKGTRYEVVNELFTS-HQNIIFGQPEMLQK 650
+I +A +G ++ ++ L H NII+G PE +K
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 375 TEIDNPFERILARECLEWFNTSKMIVFLHVNPITME 482
T + +PF ++E E S++I VNP+T+E
Sbjct: 109 TLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 144
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 544 KKL*ALRQKEHATKLSMNCLPHIK-ILYSVNLKCCK 648
KKL ++Q+E M+C PH++ I+ +V C+
Sbjct: 202 KKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMSCR 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,504
Number of Sequences: 5004
Number of extensions: 60146
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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