Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11g05
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 74 1e-13
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 57 1e-08
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 52 4e-07
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 47 1e-05
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 31 0.93
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 30 1.6
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 28 6.5
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 28 6.5
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 27 8.7
01_01_0934 + 7374381-7374652,7375339-7375864 27 8.7
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 73.7 bits (173), Expect = 1e-13
Identities = 49/179 (27%), Positives = 88/179 (49%)
Frame = +2
Query: 65 MELIKLSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGF 244
+ L ++++ A L CA A++ + + KC EEI + V+ +Y + +Y+
Sbjct: 11 LTLAVAAAVIAAACLLLCAEAVWLDLPQSGTKCVSEEIQSNVVVLADYAL-MYE----SH 65
Query: 245 MQTTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLR 424
+ P I V+V P L + G +FT+S G ++ C + +S GS +
Sbjct: 66 PSSHPTIA--VKVTSPYGNTLHHNENATVGQFAFTTSEAGNYLACFWIDSAE--KGSGIS 121
Query: 425 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 601
++LD ++G A D+ +A+KEK+ ++L +R+L V I + Y + RE R SE
Sbjct: 122 INLDWKIGIAAKDWDVIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTVSE 180
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 56.8 bits (131), Expect = 1e-08
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 1/172 (0%)
Frame = +2
Query: 89 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPK-SGGFMQTTPGI 265
LL+++ A AL F + G KC +EI ++ V+ Y V DP + + I
Sbjct: 25 LLLLSAAPRTARALRFDLESGHTKCISDEIKVNSMVVGKYHVVGPDPNFPDNPLPDSHRI 84
Query: 266 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 445
+ V N V S G +FT++ G+++ C ++ + D +
Sbjct: 85 SLRVTSPYGNSVHYAENVPS--GNFAFTATEAGDYLACFWAPDHK--PPVSIGFEFDWRS 140
Query: 446 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 601
G A D++NVA+K ++ +++ +++L + + I +E Y R+REE + ++
Sbjct: 141 GVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNK 192
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 52.0 bits (119), Expect = 4e-07
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Frame = +2
Query: 119 ASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIGMHVEVRDPND 298
A+AL F + G KC ++I + Y V + P+ GG ++ + P
Sbjct: 26 AAALRFDLQSGHTKCISDDIKVGAMAVGKYHVVV--PEGGGSTSSSSSSSSSAQPLLPES 83
Query: 299 RILLSRVYS------------LEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQ 442
+ RV S G +FT+S G+++ C ++ + + D +
Sbjct: 84 HRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHR--PTATVGFEFDWR 141
Query: 443 VGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 592
G A D+ NVA+K ++ +++ +++L D ++ I +E Y R REE ++
Sbjct: 142 SGVSARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQE 191
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 46.8 bits (106), Expect = 1e-05
Identities = 31/112 (27%), Positives = 55/112 (49%)
Frame = +2
Query: 266 GMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQV 445
G +V P I+ + G SFT++ G ++ C ++ + ++++LD +V
Sbjct: 115 GTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRN--KRLVVKLNLDWRV 172
Query: 446 GEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 601
G D+ +VA+KEKL ++L + +L V I + R +E R TSE
Sbjct: 173 GIATKDWDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSE 224
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 30.7 bits (66), Expect = 0.93
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 1/171 (0%)
Frame = +2
Query: 74 IKLSSLLVIALLADCASALYFHIAEGERKCFIEEIP-DDTTVIVNYKVELYDPKSGGFMQ 250
++L LLV+ +LA A +CF + + TV V++ V + +
Sbjct: 5 LRLGFLLVLCILAFLRPAAAIRFVIDREECFSHNVDYEGDTVHVSFVVIKAETP---WHY 61
Query: 251 TTPGIGMHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVH 430
T G+ + VRDPN + + F G H C ++N + + V
Sbjct: 62 TEDGVDL--VVRDPNGNQIHDSRDKISDKFEFIVHRRGVHRFC-FTNKSPYHE----TVD 114
Query: 431 LDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREER 583
D+ V H Y A+ E + L +I +L + ++ I EQ + + +R
Sbjct: 115 FDVLV-SHFSYYDQHAKDEHFSALFEQIAKLDEALYNIQFEQHWLEAQTDR 164
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 416 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 589
QL L Q GE D ++V+ ++L++LQL++ L +VH K++ +Q E+ R
Sbjct: 103 QLEASLRRQTGE---DLSSVSTVDELSQLQLQLESSLSKVH-ARKDELMSQQLEDMRR 156
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 130 VLPHSRRRTKMFYRRNT*RYHSYSKLQSR 216
V+P RRR + RRN RY S +KL R
Sbjct: 10 VMPTRRRRQRRRRRRNRHRYRSIAKLGKR 38
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 390 LEYMHITCSPGVLDVN 343
LEYMH TCSP ++ N
Sbjct: 564 LEYMHETCSPSIIHKN 579
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 529 IQQLSNPELKFGQFFLLCNICIVYSMLTNLNVKMNS 422
I L P + FFLL CIVY M T++++ NS
Sbjct: 432 ISLLREPMMLITGFFLLFMACIVY-MRTDMSISKNS 466
>01_01_0934 + 7374381-7374652,7375339-7375864
Length = 265
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = +1
Query: 112 RLCFSFVLPHSRRRTKMF------YRRN-T*RYHSYSKLQSRVIRSEIW 237
RLC F PH+++ + F Y+RN T H LQS + +++W
Sbjct: 134 RLCTDFFTPHAKQVVQEFMSTCSTYQRNKTEHLHPAGLLQSLSVPTQVW 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,992
Number of Sequences: 37544
Number of extensions: 304777
Number of successful extensions: 760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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