Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11g05
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 258 2e-69
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 192 2e-49
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 72 3e-13
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.16
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 33 0.16
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 33 0.16
Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical pr... 28 4.5
U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of p... 28 5.9
U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of p... 28 5.9
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 258 bits (632), Expect = 2e-69
Identities = 119/171 (69%), Positives = 143/171 (83%)
Frame = +2
Query: 89 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 268
L+ + LA A +LYFHIAE E+KCFIEEIPD+T V NYKV+LYDP + G+ P IG
Sbjct: 4 LIALLSLATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIG 62
Query: 269 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 448
MHVEV+DP D+++LS++Y+ EG +FTS+TPGEHVIC+YSNST+WF+G+QLRVHLDIQ G
Sbjct: 63 MHVEVKDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAG 122
Query: 449 EHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 601
+HA DYA +AQK+KL ELQLRIRQLLDQV QITKEQ YQR REERFRQTSE
Sbjct: 123 DHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSE 173
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 192 bits (467), Expect = 2e-49
Identities = 85/137 (62%), Positives = 110/137 (80%)
Frame = +2
Query: 89 LLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTPGIG 268
L+ + LA A +LYFHIAE E+KCFIEEIPD+T V NYKV+LYDP + G+ P IG
Sbjct: 4 LIALLSLATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDY-PNIG 62
Query: 269 MHVEVRDPNDRILLSRVYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHLDIQVG 448
MHVEV+DP D+++LS++Y+ EG +FTS+TPGEHVIC+YSN+T+WF+G+QLRVHLDIQ G
Sbjct: 63 MHVEVKDPEDKVILSKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDIQAG 122
Query: 449 EHAVDYANVAQKEKLTE 499
+HA DYA V ++ KL E
Sbjct: 123 DHAQDYAQVEEERKLDE 139
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 72.1 bits (169), Expect = 3e-13
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Frame = +2
Query: 80 LSSLLVIALLADCASALYFHIAEGERKCFIEEIPDDTTVIVNYKVELYDPKSGGFMQTTP 259
+ SL++ A +L F++ E+KC EEI + V Y+ S G T
Sbjct: 1 MKSLVIFLSAIVLAHSLRFYVPPKEKKCLKEEIHKNVVVTGEYEF------SQGIQYTGS 54
Query: 260 GIGMHVEVRDPNDRILLSR--VYSLEGMISFTSSTPGEHVICMYSNSTSWFSGSQLRVHL 433
+ V D L R L+G +FT+ IC+ ++ + G + V L
Sbjct: 55 -----IHVTDTRGHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSL 109
Query: 434 DIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 601
++ G A +Y ++A+ EKL L++ +R+L D ITK+ A+ RQREE R T+E
Sbjct: 110 ILKHGVEAKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNE 165
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 422 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 592
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 422 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 592
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 422 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 592
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 422 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 592
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 133 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 185
>Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical
protein F37D6.3 protein.
Length = 169
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 82 IFTISDSIACRLC----FSFVLPHSRRRTKMFYRRNT*RYHSYSK 204
++T S+ C LC S LPH+ + F RR+ Y+S+SK
Sbjct: 22 LWTDGSSVQCGLCRQNNASVTLPHAPGAIRHFKRRHRKTYNSFSK 66
>Z34802-3|CAA84333.1| 354|Caenorhabditis elegans Hypothetical
protein M88.3 protein.
Length = 354
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -1
Query: 330 SNE*TRDNSILSFGSRTSTCMPMPGVVCMNPP 235
SNE +NS+LS S S+ +P+PG++ + PP
Sbjct: 6 SNE--TNNSLLSSASSFSSFLPVPGILELIPP 35
>U41542-2|AAR30212.1| 623|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform b protein.
Length = 623
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 223 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 342
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
>U41542-1|AAR30211.1| 684|Caenorhabditis elegans Suppressor of
presenilin defectprotein 3, isoform a protein.
Length = 684
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 223 RSEIWRIHANNTGHRHAR*SPRSE**NTVVSSLFVGRNDL 342
R+ +WR N GH H + P+ E N SS F + +L
Sbjct: 193 RTRLWRYMEENFGHEHLK-QPKLESDNPSTSSSFESQTNL 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,940
Number of Sequences: 27780
Number of extensions: 283645
Number of successful extensions: 885
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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