Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11f20
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   4.6  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.1  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   8.0  

>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 319 LSFGATDAVFGFAAVCTGTVSTVCLSISISC 411
           +SFG + AVF F       + TV LS+ + C
Sbjct: 119 ISFGVSPAVFAFCCGFQTFLDTVILSLFVLC 149


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 343 VFGFAAVCTGTVSTVCLSISI 405
           +FGF+  C G + T C+ +SI
Sbjct: 520 MFGFSFFCFGILVTTCIMVSI 540


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 503  DKFGVTNSWTKEGTVYVLGSDGKRHRVYCR 414
            D+  + NS  K   VYV G+DG  +   C+
Sbjct: 2054 DEVDIMNSLQKPRKVYVRGTDGNLYPFLCK 2083


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 58  LCKCNKFNAQRHHNNKHFY 2
           LCKC +FNA+   N K  +
Sbjct: 351 LCKCRQFNAEMECNMKKLF 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,383
Number of Sequences: 5004
Number of extensions: 59423
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)