Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11f20
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 29 3.3
Z46381-5|CAD92392.1| 328|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC024859-9|ABQ13045.1| 296|Caenorhabditis elegans Hypothetical ... 28 5.7
AC024859-8|ABQ13046.1| 337|Caenorhabditis elegans Hypothetical ... 28 5.7
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical p... 28 7.5
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 28 7.5
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 28 7.5
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical pr... 27 9.9
U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical pr... 27 9.9
U23523-2|AAC46559.2| 399|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC006693-2|AAF60378.2| 334|Caenorhabditis elegans Serpentine re... 27 9.9
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 378 DCSCTNCRKTKHGVCCTKA*AC 313
DC T+ HGVCCTK C
Sbjct: 116 DCPSTHICNPVHGVCCTKLPTC 137
>Z46381-5|CAD92392.1| 328|Caenorhabditis elegans Hypothetical
protein M01F1.8a protein.
Length = 328
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 131 DWNYSLNPPYSAEILMY-KPYTTRKTNMNST*I*IRPEDE 247
DW Y+ NPP A+I Y KP T TN+ T +RP+ E
Sbjct: 107 DWKYTKNPPTLAKIPGYTKPLT---TNVFVTRATVRPDVE 143
>AC024859-9|ABQ13045.1| 296|Caenorhabditis elegans Hypothetical
protein Y71H2AM.14a protein.
Length = 296
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 580 DLLNQILLRKLKSWNFTKIGRALS 651
D+ NQ ++RKL ++F+KIG+ L+
Sbjct: 267 DIDNQTIIRKLMCFHFSKIGKKLN 290
>AC024859-8|ABQ13046.1| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.14b protein.
Length = 337
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 580 DLLNQILLRKLKSWNFTKIGRALS 651
D+ NQ ++RKL ++F+KIG+ L+
Sbjct: 308 DIDNQTIIRKLMCFHFSKIGKKLN 331
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 133 LELFA*SALFSRNTHVQTLYYPKNKY 210
LELFA LF+ ++ + +Y+P N+Y
Sbjct: 291 LELFAIILLFAMQSNDENIYFPANQY 316
>Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical
protein T26H2.7 protein.
Length = 659
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 157 RRIKRIVPICLVVVFILSSYIYFV 86
+R+KRI+P+ L V+F+ S +Y V
Sbjct: 72 KRLKRILPLYLFVIFLELSSLYMV 95
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 465 AFFSPRVRYSKLVPCCHENIVPLFRKKF 548
A ++PR+ Y+K + C +E + PL+ F
Sbjct: 149 ACYNPRIGYTKTMRCTYEVVFPLYSITF 176
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 465 AFFSPRVRYSKLVPCCHENIVPLFRKKF 548
A ++PR+ Y+K + C +E + PL+ F
Sbjct: 149 ACYNPRIGYTKTMRCTYEVVFPLYSITF 176
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -3
Query: 244 IFRSNSYSGRIHICFSGSIRFVHEYFC*IRRIKRIVPICLVVVFILSSYIYFVL 83
+ R +S S F + F H RR+KRI+P+ L+V+ S ++++++
Sbjct: 49 LLRKSSISASYKSNFQFIVAFYH------RRLKRILPLYLLVIMSSSIFLFWMI 96
>Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical
protein H12I19.5a protein.
Length = 607
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -3
Query: 244 IFRSNSYSGRIHICFSGSIRFVHEYFC*IRRIKRIVPICLVVVFILSSYIYFVL 83
+ R +S S F + F H RR+KRI+P+ L+V+ S ++++++
Sbjct: 49 LLRKSSISASYKSNFQFIVAFYH------RRLKRILPLYLLVIMSSSIFLFWMI 96
>U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical
protein C27A2.4 protein.
Length = 678
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 237 LKMKVIVAEIK*KMQNKIESSFTGGRTLKLWCN 335
L+ +V+EI +M+NK++ GGR +L C+
Sbjct: 257 LRSGPLVSEIFERMKNKLDCQVGGGRASRLGCS 289
>U23523-2|AAC46559.2| 399|Caenorhabditis elegans Hypothetical
protein F53A9.4 protein.
Length = 399
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 524 DVFMAARDKFGVTNSWTKEGTVYVLGSDGK 435
DVF + RD N K+ T+YV G +GK
Sbjct: 141 DVFKSFRDPHDKRNMPAKDKTIYVEGPNGK 170
>AC006693-2|AAF60378.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein271 protein.
Length = 334
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -3
Query: 142 IVPICLVVVFILSSYIYFVLCII*HITCLCKCNKFN 35
++ + LVV+FI+S ++F+ + + CL + K +
Sbjct: 191 LLSVFLVVIFIISEILFFIFYVKIQMKCLARTLKLS 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,841,956
Number of Sequences: 27780
Number of extensions: 340554
Number of successful extensions: 1026
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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