Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11f19
         (147 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   2.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   7.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   7.1  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 87  CSMIISLHFYLLMRKLIK 140
           CS+I   + Y+   KL+K
Sbjct: 104 CSVISDANIYIRFNKLVK 121


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 87  CSMIISLHFYLLMRKLIK 140
           CS+I   + Y+   KL+K
Sbjct: 104 CSVISDANIYIRFNKLVK 121


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 98  YFFTFLFIDEEIN 136
           Y+ T+LF +EE N
Sbjct: 434 YWSTYLFREEEQN 446


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 98  YFFTFLFIDEEIN 136
           Y+ T+LF +EE N
Sbjct: 434 YWSTYLFREEEQN 446


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 98  NHTTSTKCQY 69
           N T STKC Y
Sbjct: 628 NVTLSTKCPY 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,347
Number of Sequences: 438
Number of extensions: 170
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 29
effective length of database: 133,641
effective search space used:  2539179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)