Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11f17
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...   104   1e-23
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    95   1e-20
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    38   0.002
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    34   0.016
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    29   0.82 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    28   1.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   5.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.6  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   7.6  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   7.6  

>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score =  104 bits (250), Expect = 1e-23
 Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
 Frame = +1

Query: 214 FMKGVPDAPRCGFSNAVVQIMRMHAVPYE---SHDVLSDENLRQGIKDYSNWPTIPQVFI 384
           FMKG P  P CGFS   +QI+ +  V  +   +++VLS++ LR+GIK++S+WPTIPQ++I
Sbjct: 41  FMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYI 100

Query: 385 NGEFVGGCDIMLQMHQSGELIEELKKVGIKSALLTAEEAKQGEKK 519
           NGEFVGG DI+  MH+SGEL + LK++      L  E+ K  E++
Sbjct: 101 NGEFVGGSDILASMHKSGELHKILKEIN----ALAPEQPKDSEEE 141


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 40/81 (49%), Positives = 59/81 (72%)
 Frame = +1

Query: 214 FMKGVPDAPRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGE 393
           F+KG P  P CGFS  +V ++R   V Y   ++L+D+++RQG+K +S+WPT PQ++I GE
Sbjct: 162 FLKGTPSEPACGFSRKLVGLLREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGE 221

Query: 394 FVGGCDIMLQMHQSGELIEEL 456
           FVGG DI+ +M ++GEL E L
Sbjct: 222 FVGGLDIVSEMIENGELQEML 242


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
 Frame = +1

Query: 244 CGFSNAVVQIMRMHAVPYESHDVLSDEN---LRQGIKDYSNWPTIPQVFINGEFVGGCDI 414
           C F  A    +  ++ PY+++++   EN   ++  + + +   T+P +F   +F+GG   
Sbjct: 26  CPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSD 85

Query: 415 MLQMHQSG---ELIEELKK 462
           + ++  SG   ++I ELK+
Sbjct: 86  LNKLRSSGTLTKMIAELKE 104


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +1

Query: 238 PRCGFSNA----VVQIMRMH--AVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFV 399
           P C +S A    + + +R+   AV  E  D    + LR  +   S+  T+P +F+ G  +
Sbjct: 74  PGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSI 133

Query: 400 GGCDIMLQMHQSGEL 444
           GG D +  ++Q  +L
Sbjct: 134 GGSDSVRALYQEEKL 148


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +1

Query: 238 PRCGFSNAVVQIMRMHAVPYESHDVLSDENLRQGIKDYSNWPTIPQVFINGEFVGGCDIM 417
           P C  +  V+   ++ A  Y+   + + + ++  +   +   T+P +FI+ + VGG    
Sbjct: 26  PYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSDF 85

Query: 418 LQMHQSGEL 444
             + + GEL
Sbjct: 86  QALFKKGEL 94


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 328 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALLTAEEAK 504
           L  G++D+ ++  I  + +    VG     +Q +Q+G +++ELKK + +K+++L     K
Sbjct: 220 LAAGLRDWVDFGVICALLLLNATVG----FVQEYQAGSIVDELKKTMALKASVLRDGRVK 275

Query: 505 QGE 513
           + E
Sbjct: 276 EIE 278


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 512 SPCFASSAVKSALFIPTFFSSSMSSPDWCICSIMSQPPTNS 390
           SP   SS + S+    + FSS++SS      S  S  PT+S
Sbjct: 299 SPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 430 QSGELIEELKKVGIKSALLTAEEAK 504
           + GE ++E++K+GI+ A   AEE++
Sbjct: 298 RKGEDVQEIEKIGIEIAKARAEESQ 322


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 348  IFYTLSKIFITQHIMALVRNCMHPHNLHNSIT 253
            I YT S  F+T   +  +R C H     N +T
Sbjct: 2526 IKYTTSSFFLTDDFVRFIRVCFHSRISGNLLT 2557


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 321 ITQHIMALVRNCMHPHNLHNSITETA 244
           I QH+  ++  C +P NL  S++  A
Sbjct: 136 IVQHLPQMIAICTYPSNLRKSLSSLA 161


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 328 LRQGIKDYSNWPTIPQVFINGEFVGGCDIMLQMHQSGELIEELKK-VGIKSALL 486
           L  G++D+ ++  I  + +    VG     +Q +Q+G +++ELKK + +K+ ++
Sbjct: 132 LAAGLRDWVDFGVICALLMLNAVVG----FVQEYQAGSIVDELKKSLALKAVVI 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,558
Number of Sequences: 5004
Number of extensions: 44190
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)