Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11f12
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0557 + 4394754-4396040 56 4e-08
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 50 2e-06
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 46 3e-05
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 42 7e-04
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 40 0.003
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 39 0.005
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 37 0.019
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 32 0.53
01_06_0365 + 28767538-28767696,28768299-28768520,28768630-287688... 30 1.6
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 30 2.2
01_06_1665 - 38988014-38988078,38988459-38988546,38988921-389890... 29 2.8
04_04_1586 - 34621945-34623366 29 5.0
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 8.7
03_05_0111 - 20919291-20919439,20920128-20920237,20920341-209204... 28 8.7
02_01_0479 + 3453989-3454092,3454674-3454706,3454757-3454853,345... 28 8.7
>11_01_0557 + 4394754-4396040
Length = 428
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/90 (26%), Positives = 50/90 (55%)
Frame = +2
Query: 281 QGAVMSSFFFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAMPTIVNKGGWVAASN 460
+G ++S F++GY + +P +++GG++V FV+ ++C +P N+ + S
Sbjct: 45 KGMILSMFYYGYVLSQIPGGWAAQRLGGRLVLLLSFVLWSSICAVVPLDPNRVILLVLS- 103
Query: 461 AQLFMGMAHSCFSTVYETLIERWLPPNERN 550
+L +G+A T++ +W+PP ER+
Sbjct: 104 -RLLVGVAQGLIFPSIHTVLAQWVPPQERS 132
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 50.0 bits (114), Expect = 2e-06
Identities = 36/176 (20%), Positives = 69/176 (39%)
Frame = +2
Query: 134 RHVQILYMFVGAIVIGLVRGSIGVAVLALNDEDRRHDTYLEIHNWDKRIQGAVMSSFFFG 313
R +L F ++ + R ++ +A+L ++ E W G + SSFF+G
Sbjct: 181 RWTVVLLCFFSFLLCNMDRVNMSIAILPMSSE----------FGWSPATVGLIQSSFFWG 230
Query: 314 YAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAMPTIVNKGGWVAASNAQLFMGMAHSC 493
Y + + + + GGK+V VV ++ + + K G + FMG+
Sbjct: 231 YLLTQILGGIWADRFGGKVV-LGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGV 289
Query: 494 FSTVYETLIERWLPPNERNTYSHFIYXXXXXXXXXXXXXXXXXXXTRLGWEFIYYA 661
++ +W+P +ER+ +Y +R GW ++YA
Sbjct: 290 AMPAMNNILSKWVPVSERSRSLALVY-SGMYLGSVTGLAFSPLLISRFGWPSVFYA 344
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = +2
Query: 266 WDKRIQGAVMSSFFFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAMPTIVNKGGW 445
W+ + G + SSFF+GY + + + +GGK V V+ ++ A+ K G
Sbjct: 153 WNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTV-LGFGVIWWSIATALTPFAAKLGL 211
Query: 446 VAASNAQLFMGMAHSCFSTVYETLIERWLPPNERNTYSHFIY 571
+ FMG+ ++ +W+P +ER+ +Y
Sbjct: 212 PFLLVTRAFMGVGEGVAMPAMNNILSKWVPVSERSRSLALVY 253
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/100 (25%), Positives = 40/100 (40%)
Frame = +2
Query: 254 EIHNWDKRIQGAVMSSFFFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAMPTIVN 433
+ + W G V SSF +GY V + L+ GGK V + P
Sbjct: 127 QAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAA 186
Query: 434 KGGWVAASNAQLFMGMAHSCFSTVYETLIERWLPPNERNT 553
+ W+ S ++ +GMA ++ RW P ER++
Sbjct: 187 RSLWLFLS-TRVLLGMAEGVALPSMNNMVLRWFPRTERSS 225
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 39.5 bits (88), Expect = 0.003
Identities = 28/108 (25%), Positives = 52/108 (48%)
Frame = +2
Query: 227 EDRRHDTYLEIHNWDKRIQGAVMSSFFFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGAL 406
E RR L + + ++ +G +M S G + +P ++IGG+ V FV+ +
Sbjct: 24 ESRRAPADLSVPRYGRK-RGRLMVSP--GEYLWEIPGGWAAQRIGGRRVLLLSFVLWSLI 80
Query: 407 CVAMPTIVNKGGWVAASNAQLFMGMAHSCFSTVYETLIERWLPPNERN 550
C +P + + S +LF+G+A T++ +W+PP ER+
Sbjct: 81 CGLIPLDPKREVILVLS--RLFVGVAQGFIFPAIHTVLAQWVPPQERS 126
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/98 (24%), Positives = 37/98 (37%)
Frame = +2
Query: 260 HNWDKRIQGAVMSSFFFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAMPTIVNKG 439
+ W G V SSF +GY + L + GGK V + P ++
Sbjct: 154 YGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLATFLTPWAASQS 213
Query: 440 GWVAASNAQLFMGMAHSCFSTVYETLIERWLPPNERNT 553
+ + LF G+A T + +W P +ER T
Sbjct: 214 TIMLLAIRALF-GLAEGVAFPTMSTFLPKWFPTHERAT 250
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 260 HNWDKRIQGAVMSSFFFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAM 418
+ W+ G V SSFF+GYA+ +P L + GG+ V I VV +L A+
Sbjct: 163 YGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRV-LEIGVVAWSLATAI 214
>04_04_1218 -
31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 179 GLVRGSI-GVAVLALNDEDRRHDTYLEIHNWDKRIQGAVM 295
GLV+ S+ GVA + L D+++ D YLE+++ + R Q A +
Sbjct: 153 GLVKKSLDGVARMILEDKEKMGDVYLELNSGEFRRQNAAL 192
>01_06_0365 +
28767538-28767696,28768299-28768520,28768630-28768868,
28769499-28770024,28770115-28770388,28770495-28771134,
28771220-28771448,28771682-28771948,28772031-28772294,
28772700-28773344
Length = 1154
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 122 KVGIRHVQILYMFVGAIVIGLVRG-SIGVAVLA 217
KVG +++Q+L FVG VIG +RG + + V+A
Sbjct: 53 KVG-KYIQVLTAFVGGFVIGFIRGWMLALVVMA 84
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 437 GGWVAASNAQLFMGMAHSCFSTVYETLIERWLPPNE 544
GGW+ A A LF A CF T + ++ W NE
Sbjct: 159 GGWLNAKMADLFTEYADFCFKT-FGNRVKHWFTFNE 193
>01_06_1665 -
38988014-38988078,38988459-38988546,38988921-38989082,
38989268-38989359,38989896-38990007,38990040-38990181,
38990448-38990668
Length = 293
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = -3
Query: 538 RW*PSFYQGLVNSGEATMCHSHEQLCVR--CCHPSTFINNCRHSNT*SSIDNE-YGCAND 368
RW Y L T+C C CC P+TF N +N S + N GC
Sbjct: 42 RWAGFDYYVLALQWPGTVCRQTSHCCSSNGCCRPTTFDGNKVAANHPSYLQNGILGCGR- 100
Query: 367 FPTNFPQ 347
FP F +
Sbjct: 101 FPPQFDE 107
>04_04_1586 - 34621945-34623366
Length = 473
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 299 SFFFGY-AVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAMPTIVNKGGWVAASNAQLFM 475
SF+F AV+ +PA LL ++GG + C A + + + + I +G + +A ++
Sbjct: 408 SFYFDQGAVLTLPARNLLVEVGGAVFCLAFAPSSSGISI-LGNIQQEGIQITVDSANGYV 466
Query: 476 G 478
G
Sbjct: 467 G 467
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 365 SHQFSSVTNQLVLASLRIQRRMTTLLLLEFFYPNCESLNKYHVGDPHR 222
S + SV L L++QRR+ + L +FF PN L++ HR
Sbjct: 797 SAKTKSVIELKKLQLLQLQRRVRSEFLQDFFKPNTTDLDRIKSVKKHR 844
>03_05_0111 -
20919291-20919439,20920128-20920237,20920341-20920466,
20920545-20920632,20920933-20921053,20921159-20921231,
20921399-20921462,20921543-20921739,20921844-20921899,
20922050-20922146,20923731-20923870
Length = 406
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +2
Query: 173 VIGLVRGSIGVAVLALNDEDRRHDTYLEIHNWDKRIQGAVMSSFFFGYAVMLVPADLLLR 352
VIG S G+ A++ EDR+H ++ + + + ++ A + FF A+ + A+ ++
Sbjct: 181 VIGHSATSGGILDRAIDAEDRKHGDFMRLDHVEGYLELAAKTKSFFVTALSMWDAEYYIK 240
>02_01_0479 +
3453989-3454092,3454674-3454706,3454757-3454853,
3455023-3455081,3455545-3455619,3455726-3455798,
3455927-3456047,3456357-3456444,3456546-3456671,
3456771-3456880,3457004-3457152
Length = 344
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 173 VIGLVRGSIGVAVLALNDEDRRHDTYLEIHNWDKRIQGAVMSSFFFGYAVMLVPADLLLR 352
VIG S G+ A+ EDR+H ++ I + + + + + +F AV L AD ++
Sbjct: 119 VIGHSAISGGIVDRAIEAEDRKHGDFMRIDHVEGYLALSGKTKTYFATAVSLWDADFYVK 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,111,227
Number of Sequences: 37544
Number of extensions: 427840
Number of successful extensions: 1054
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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