Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11f12
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.96 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 461 AQLFMGMAHSCFSTVYETLIERWL 532
           A   +G+    FS +YE L  RWL
Sbjct: 90  ADCLVGLVVMPFSAIYEVLENRWL 113



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 538 ERKEYLQSFYLWRYTIRNHNRATNLWFTVSNTSWLGIYL 654
           E  +  +SFY   Y  +N ++  +LW   ++ + L I L
Sbjct: 14  EGNQLNRSFYSASYPPQNRSQEEDLWNLATDRAGLAILL 52


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 62  SYVVCSHAWFIGC 100
           SY+  S  WF+GC
Sbjct: 289 SYIKASEIWFLGC 301


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 305 FFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAM 418
           FF   V ++P   L+  + GK +  A+ +V+ ++CV +
Sbjct: 289 FFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTV 326


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 305 FFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAM 418
           FF   V ++P   L+  + GK +  A+ +V+ ++CV +
Sbjct: 289 FFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTV 326


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 577 YTIRNHNRATNLWFTVSNTSWLGIYLLRLGHGDFVYGSSYRDT 705
           YT+RN+ R  N  +     S + +  L +G  +F+  +   +T
Sbjct: 206 YTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLSSTRTAET 248


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 417 IATHRAPLTTNMAVQTIFPPIFLSNKSAGTSITAYPKKNDDITAP 283
           I+ +  P+ +  +  +++P    S +S  T  T  P+ + D T+P
Sbjct: 379 ISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,917
Number of Sequences: 438
Number of extensions: 4881
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)