Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11f11
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/52 (21%), Positives = 20/52 (38%)
 Frame = +1

Query: 208 DGIIRVWNTATGVQDRYIQSMEHHTDWVNDIVLCCGGKNLISASSDTTVKVW 363
           D ++R     + V   Y         WV+  +   GGK  ++ S     ++W
Sbjct: 35  DIMVRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIW 86


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 15/65 (23%), Positives = 33/65 (50%)
 Frame = +1

Query: 61  LKCRKMGTTMRKKTQVSFVIRDEEERKHKNGVSSLQLDPVQGRLYSAGRDGIIRVWNTAT 240
           L+ R     ++ + +V ++I+ E ER+H+  +  + L+    R+    + G  R  + + 
Sbjct: 27  LRSRTKEERLQHRREV-WLIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSP 85

Query: 241 GVQDR 255
           G +DR
Sbjct: 86  GSRDR 90


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 82  TTMRKKTQVSFVIRDEEERKHKNGVSSLQLDPVQ 183
           TT+   T+    I+  EER+ K+ V   QL   Q
Sbjct: 85  TTLGLLTKAKRFIKSLEERERKHAVHKEQLSREQ 118


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 595 LVDSWLSCILILC 557
           L DSW+S  ++LC
Sbjct: 110 LCDSWVSLDILLC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,624
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)