Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11f06
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371 117 7e-27
01_01_1032 - 8174958-8175101,8175625-8175923,8176277-8176409,817... 30 1.3
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 29 3.1
01_01_1030 + 8158901-8159050,8159178-8159310,8159410-8159708,816... 29 3.1
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 4.1
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 29 4.1
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 29 4.1
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 29 4.1
01_05_0645 - 23899579-23904483 29 4.1
05_01_0326 - 2558237-2558344,2558605-2558706,2558867-2558944,255... 28 7.1
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 28 7.1
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 27 9.4
>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
Length = 185
Score = 117 bits (282), Expect = 7e-27
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 17/134 (12%)
Frame = +3
Query: 264 VEYIGFAAGYKIMERLTREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQ 443
+E IGF G+++ ER T E PRF D L+ +KFIC DFW+ ++KKQIDNL+TNH+G +VLQ
Sbjct: 37 IEAIGFQVGHQLTERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
Query: 444 DNAFRFLTNFS-----------------NGHQYLEYAPRYVAYTCGLIRGGLANLCINSI 572
DN FR+LT S G + + + CG+IRG L NL I+
Sbjct: 97 DNHFRWLTRVSVDPSVESMDATENDSTTLGDSAAQTTSMLLYFPCGIIRGALTNLGISCS 156
Query: 573 VTAEVQSMPSCKFH 614
VTA++ ++P+C+ H
Sbjct: 157 VTADMSNLPACELH 170
>01_01_1032 -
8174958-8175101,8175625-8175923,8176277-8176409,
8176525-8176671
Length = 240
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +3
Query: 213 EKFKNNDNGEKETDLSVVEYIGFAAGYKIMERL-----TREWPRFKDELDTMKFICTDFW 377
+K+++ GE E D V +G Y ++ +L T+EWP E + + T
Sbjct: 12 DKYRSFMYGEGEKD--TVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEM 69
Query: 378 TCIYKKQIDNLRTNHQGVYVLQDNAFRFLT 467
I+K + ++ ++ H + N RFL+
Sbjct: 70 ELIHKVRPEDQKSVHSQKFCASTNGMRFLS 99
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 153 RMADDIIFELLHSEIINYSIEKFKNN-DNGEKETDLSVVEYIGFAAGYKIMERLTREWPR 329
+M+ + E + + + ++++K + N +K+ + + I GYK++++ R+W R
Sbjct: 64 KMSSSVKIESVVPDDLMAKMDRYKKDLQNMKKQKEAVESKQIKQEEGYKLLQQEQRKWKR 123
Query: 330 FKDELDT 350
K+ L++
Sbjct: 124 DKENLNS 130
>01_01_1030 +
8158901-8159050,8159178-8159310,8159410-8159708,
8160147-8160287
Length = 240
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +3
Query: 213 EKFKNNDNGEKETDLSVVEYIGFAAGYKIMERL-----TREWPRFKDELDTMKFICTDFW 377
+K+++ GE E D V +G Y ++ +L T+EWP E + + T
Sbjct: 13 DKYRSFMYGEGEKD--TVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEM 70
Query: 378 TCIYKKQIDNLRTNHQGVYVLQDNAFRFL 464
++K + ++ ++ H + N RFL
Sbjct: 71 ELVHKVRPEDQKSVHSQKFCSSTNGMRFL 99
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 513 VAYTCGLIRGGLANLCINSIVTAEVQSM 596
+ Y CGL +G +AN C S V E+Q++
Sbjct: 485 ICYKCGL-KGHIANRCFKSKVKKEIQAL 511
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 513 VAYTCGLIRGGLANLCINSIVTAEVQSM 596
+ Y CGL +G +AN C S V E+Q++
Sbjct: 804 ICYKCGL-KGHIANRCFKSKVKKEIQAL 830
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 432 YVLQDNAFRFLTNFSNGHQYLEYAPR--YVAYTCGLIRGGLANLCI 563
Y+ + A FLT+F GH Y++ PR ++ G I G N+ +
Sbjct: 499 YISMNQAVSFLTDFKLGH-YMKIPPRSMFLVQFIGTIVAGTVNMSV 543
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 403 IIFVQTTKEFMYFKIMHSVF*QIFLMVISTWNMLLDMLLTLVGSFEVDWLISVLTVLSQQ 582
+IFV + ++ IM + FL +L ++LTLV E+ +ISV T +S Q
Sbjct: 480 LIFVHVIESLVFVPIMIGIL--FFLFEFYDDQLLAFLVLTLVWLCELFTMISVRTSISMQ 537
Query: 583 KF 588
F
Sbjct: 538 FF 539
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 513 VAYTCGLIRGGLANLCINSIVTAEVQSM 596
+ Y CGL +G +AN C S V E+Q++
Sbjct: 724 ICYKCGL-KGHIANRCFKSKVKKEIQAL 750
>05_01_0326 -
2558237-2558344,2558605-2558706,2558867-2558944,
2559024-2559089,2559885-2559975,2560414-2560490,
2560905-2561114,2561202-2561319,2561824-2561921,
2562037-2562102,2562189-2562351,2563542-2563674,
2563760-2563793
Length = 447
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 210 IEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTRE 320
I FKN +ET +VE++ + G+K +ER++++
Sbjct: 188 ITAFKNKAPTTEETMTKIVEFVQQSKGWKNVERVSKD 224
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 411 RTNHQGVYVLQDNAFRFL---TNFSNG-HQYLEYAPRYVAYTCGLIRGGLANLC 560
R HQG + + F F T F +G QY+E +YV GL+R GL C
Sbjct: 147 RKGHQGWMKQEGSYFIFPGGGTMFPDGAEQYIEKLAQYVPLKSGLLRTGLDMGC 200
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 498 YAPRYVAYTCGLIRGGLANLCINSIV 575
Y+ RYV C L+ G L+N I S+V
Sbjct: 49 YSTRYVLVNCDLLPGLLSNALIGSLV 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,217
Number of Sequences: 37544
Number of extensions: 303694
Number of successful extensions: 583
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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