Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11f06
(634 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC005757-2|AAC62259.1| 160|Homo sapiens R32611_2 protein. 164 3e-40
BC030604-1|AAH30604.1| 94|Homo sapiens TRAPPC6B protein protein. 153 4e-37
BC004450-1|AAH04450.1| 173|Homo sapiens trafficking protein par... 151 3e-36
BC001907-1|AAH01907.1| 173|Homo sapiens trafficking protein par... 151 3e-36
BC047328-1|AAH47328.1| 130|Homo sapiens trafficking protein par... 130 4e-30
BC111690-1|AAI11691.1| 807|Homo sapiens SCUBE2 protein protein. 31 2.6
AK131552-1|BAD18686.1| 682|Homo sapiens protein ( Homo sapiens ... 31 2.6
AK123039-1|BAC85521.1| 971|Homo sapiens protein ( Homo sapiens ... 31 2.6
AJ400877-1|CAB92285.1| 999|Homo sapiens CEGP1 protein protein. 31 2.6
>AC005757-2|AAC62259.1| 160|Homo sapiens R32611_2 protein.
Length = 160
Score = 164 bits (398), Expect = 3e-40
Identities = 74/154 (48%), Positives = 106/154 (68%)
Frame = +3
Query: 156 MADDIIFELLHSEIINYSIEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTREWPRFK 335
MAD ++FE LH+E++ + G ++ LSV+E +GF G + ERL RE F+
Sbjct: 2 MADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLPRETLAFR 61
Query: 336 DELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYV 515
+ELD +KF+C D W +++KQ+D+LRTNHQG YVLQDN+F L ++G QYLE AP+++
Sbjct: 62 EELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFL 121
Query: 516 AYTCGLIRGGLANLCINSIVTAEVQSMPSCKFHI 617
A+TCGL+RG L L I S+VTA V ++P CKF +
Sbjct: 122 AFTCGLLRGALYTLGIESVVTASVAALPVCKFQV 155
>BC030604-1|AAH30604.1| 94|Homo sapiens TRAPPC6B protein protein.
Length = 94
Score = 153 bits (372), Expect = 4e-37
Identities = 67/92 (72%), Positives = 78/92 (84%)
Frame = +3
Query: 351 MKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCG 530
MKFIC DFWT ++KKQIDNLRTNHQG+YVLQDN FR LT S G QYLE+A +Y+A+TCG
Sbjct: 1 MKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCG 60
Query: 531 LIRGGLANLCINSIVTAEVQSMPSCKFHIHVQ 626
LIRGGL+NL I SIVTAEV SMP+CKF + +Q
Sbjct: 61 LIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 92
>BC004450-1|AAH04450.1| 173|Homo sapiens trafficking protein
particle complex 6A protein.
Length = 173
Score = 151 bits (365), Expect = 3e-36
Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 14/168 (8%)
Frame = +3
Query: 156 MADDIIFELLHSEII--------------NYSIEKFKNNDNGEKETDLSVVEYIGFAAGY 293
MAD ++FE LH+E++ + + + ++ LSV+E +GF G
Sbjct: 1 MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ 60
Query: 294 KIMERLTREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNF 473
+ ERL RE F++ELD +KF+C D W +++KQ+D+LRTNHQG YVLQDN+F L
Sbjct: 61 ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM 120
Query: 474 SNGHQYLEYAPRYVAYTCGLIRGGLANLCINSIVTAEVQSMPSCKFHI 617
++G QYLE AP+++A+TCGL+RG L L I S+VTA V ++P CKF +
Sbjct: 121 ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQV 168
>BC001907-1|AAH01907.1| 173|Homo sapiens trafficking protein
particle complex 6A protein.
Length = 173
Score = 151 bits (365), Expect = 3e-36
Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 14/168 (8%)
Frame = +3
Query: 156 MADDIIFELLHSEII--------------NYSIEKFKNNDNGEKETDLSVVEYIGFAAGY 293
MAD ++FE LH+E++ + + + ++ LSV+E +GF G
Sbjct: 1 MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ 60
Query: 294 KIMERLTREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNF 473
+ ERL RE F++ELD +KF+C D W +++KQ+D+LRTNHQG YVLQDN+F L
Sbjct: 61 ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM 120
Query: 474 SNGHQYLEYAPRYVAYTCGLIRGGLANLCINSIVTAEVQSMPSCKFHI 617
++G QYLE AP+++A+TCGL+RG L L I S+VTA V ++P CKF +
Sbjct: 121 ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQV 168
>BC047328-1|AAH47328.1| 130|Homo sapiens trafficking protein
particle complex 6B protein.
Length = 130
Score = 130 bits (314), Expect = 4e-30
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Frame = +3
Query: 156 MADDIIFELLHSEIINYSIEKFKNNDNGEKETD--LSVVEYIGFAAGYKIMERLTREWPR 329
MAD+ +F LLH+E+++ +K+ + GE E ++ +E +GF G ++ER T++ R
Sbjct: 1 MADEALFLLLHNEMVS---GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTAR 57
Query: 330 FKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPR 509
FKDELD MKFIC DFWT ++KKQIDNLRTNH QYL +
Sbjct: 58 FKDELDIMKFICKDFWTTVFKKQIDNLRTNH---------------------QYLAF--- 93
Query: 510 YVAYTCGLIRGGLANLCINSIVTAEVQSMPSCKFHIHVQ 626
TCGLIRGGL+NL I SIVTAEV SMP+CKF + +Q
Sbjct: 94 ----TCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 128
>BC111690-1|AAI11691.1| 807|Homo sapiens SCUBE2 protein protein.
Length = 807
Score = 31.5 bits (68), Expect = 2.6
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +3
Query: 363 CTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRG 542
C D C + D+ NH G + N L F++ E C + G
Sbjct: 362 CQDVDECSLDRTCDHSCINHPGTFACACNRGYTLYGFTHCGDTNE---------CSINNG 412
Query: 543 GLANLCINSIVTAEVQSMPSCKFH 614
G +C+N++ + E Q P K H
Sbjct: 413 GCQQVCVNTVGSYECQCHPGYKLH 436
>AK131552-1|BAD18686.1| 682|Homo sapiens protein ( Homo sapiens
cDNA FLJ16792 fis, clone TBAES2007379, moderately
similar to Homo sapiens signal peptide, CUB domain,
EGF-like 2 (SCUBE2). ).
Length = 682
Score = 31.5 bits (68), Expect = 2.6
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +3
Query: 363 CTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRG 542
C D C + D+ NH G + N L F++ E C + G
Sbjct: 362 CQDVDECSLDRTCDHSCINHPGTFACACNRGYTLYGFTHCGDTNE---------CSINNG 412
Query: 543 GLANLCINSIVTAEVQSMPSCKFH 614
G +C+N++ + E Q P K H
Sbjct: 413 GCQQVCVNTVGSYECQCHPGYKLH 436
>AK123039-1|BAC85521.1| 971|Homo sapiens protein ( Homo sapiens
cDNA FLJ41044 fis, clone NT2RP7000466, highly similar
to Mus musculus CUB domain and EGF-like repeat
containing 1 (Cegf1). ).
Length = 971
Score = 31.5 bits (68), Expect = 2.6
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +3
Query: 363 CTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRG 542
C D C + D+ NH G + N L F++ E C + G
Sbjct: 362 CQDVDECSLDRTCDHSCINHPGTFACACNRGYTLYGFTHCGDTNE---------CSINNG 412
Query: 543 GLANLCINSIVTAEVQSMPSCKFH 614
G +C+N++ + E Q P K H
Sbjct: 413 GCQQVCVNTVGSYECQCHPGYKLH 436
>AJ400877-1|CAB92285.1| 999|Homo sapiens CEGP1 protein protein.
Length = 999
Score = 31.5 bits (68), Expect = 2.6
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +3
Query: 363 CTDFWTCIYKKQIDNLRTNHQGVYVLQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRG 542
C D C + D+ NH G + N L F++ E C + G
Sbjct: 362 CQDVDECSLDRTCDHSCINHPGTFACACNRGYTLYGFTHCGDTNE---------CSINNG 412
Query: 543 GLANLCINSIVTAEVQSMPSCKFH 614
G +C+N++ + E Q P K H
Sbjct: 413 GCQQVCVNTVGSYECQCHPGYKLH 436
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,071,760
Number of Sequences: 237096
Number of extensions: 1743011
Number of successful extensions: 2846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2844
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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