Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11f03
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical pr... 176 1e-44
AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein ... 175 2e-44
AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein ... 175 2e-44
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 32 0.29
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 32 0.29
U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical p... 30 1.2
Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical p... 30 1.2
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical pr... 29 3.6
>Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical
protein K04G2.5 protein.
Length = 223
Score = 176 bits (428), Expect = 1e-44
Identities = 84/175 (48%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Frame = +1
Query: 76 NPVIIAAQARHTASLIFLHGLGDTGHGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFR 252
NP I++ + H +LIFLHGLGD GHGWA + ++K ICP +S PVTLN G R
Sbjct: 8 NPSIVSPRGEHKGTLIFLHGLGDQGHGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMR 67
Query: 253 MPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXX 432
MP+WFDL LD A EDE+GI RAT VH LI EV AG+PA ++ +GGFS GG
Sbjct: 68 MPAWFDLFGLDPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYA 127
Query: 433 XXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVSFKWGQMT 597
TYP++L G++ LS + + FPG A PIF HG D +V ++GQM+
Sbjct: 128 GLTYPQKLGGIVGLSSFFLQRTKFPGSFTANNATPIFLGHGTDDFLVPLQFGQMS 182
>AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 175 bits (426), Expect = 2e-44
Identities = 84/175 (48%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Frame = +1
Query: 76 NPVIIAAQARHTASLIFLHGLGDTGHGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFR 252
NP I++ + H +LIFLHGLGD GHGWA + ++K ICP +S PVTLN G R
Sbjct: 8 NPSIVSPRGEHKGTLIFLHGLGDQGHGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMR 67
Query: 253 MPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXX 432
MP+WFDL LD A EDE+GI RAT VH LI EV AG+PA ++ +GGFS GG
Sbjct: 68 MPAWFDLFGLDPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYA 127
Query: 433 XXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVSFKWGQMT 597
TYP++L G++ LS + FPG A PIF HG D +V ++GQM+
Sbjct: 128 GLTYPQKLGGIVGLSSXFLQRTKFPGSFTANNATPIFLGHGTDDFLVPLQFGQMS 182
>AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 175 bits (426), Expect = 2e-44
Identities = 84/175 (48%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Frame = +1
Query: 76 NPVIIAAQARHTASLIFLHGLGDTGHGWASTI-AGIRGPHVKVICPTASTMPVTLNNGFR 252
NP I++ + H +LIFLHGLGD GHGWA + ++K ICP +S PVTLN G R
Sbjct: 8 NPSIVSPRGEHKGTLIFLHGLGDQGHGWADAFKTEAKHDNIKFICPHSSERPVTLNMGMR 67
Query: 253 MPSWFDLRTLDATAPEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXX 432
MP+WFDL LD A EDE+GI RAT VH LI EV AG+PA ++ +GGFS GG
Sbjct: 68 MPAWFDLFGLDPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYA 127
Query: 433 XXTYPERLAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHGDKDPVVSFKWGQMT 597
TYP++L G++ LS + FPG A PIF HG D +V ++GQM+
Sbjct: 128 GLTYPQKLGGIVGLSSXFLQRTKFPGSFTANNATPIFLGHGTDDFLVPLQFGQMS 182
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 208 PTASTMPV--TL---NNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHG 342
P++ T+PV TL N+G R + F LR +D + +D+ GIE T +HG
Sbjct: 783 PSSPTIPVENTLKRRNSGTRRNALFSLRDMDEKSAKDDHGIEHKT--IHG 830
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 208 PTASTMPV--TL---NNGFRMPSWFDLRTLDATAPEDEEGIERATDLVHG 342
P++ T+PV TL N+G R + F LR +D + +D+ GIE T +HG
Sbjct: 711 PSSPTIPVENTLKRRNSGTRRNALFSLRDMDEKSAKDDHGIEHKT--IHG 758
>U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical
protein T20B5.3 protein.
Length = 837
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 154 GWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSWF-DLRTLDATAPE 300
G A+T IR + ++C T + NG R+ S F D RTLD E
Sbjct: 448 GLATTAEEIRNQRLSLLCATCEMYYLPFENGPRVQSMFKDFRTLDPLQSE 497
>Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical
protein C08H9.3b protein.
Length = 123
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 117 AYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGFDYARDAQQRFPY 254
AY+ T F HR+WM W QRP C+ Y ++ D F Y
Sbjct: 24 AYVSTDFEVHRNWMAV--TW-QRPLCEWYTEATSEWTLDYPPFFAY 66
>Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical
protein C08H9.3a protein.
Length = 758
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 117 AYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGFDYARDAQQRFPY 254
AY+ T F HR+WM W QRP C+ Y ++ D F Y
Sbjct: 24 AYVSTDFEVHRNWMAV--TW-QRPLCEWYTEATSEWTLDYPPFFAY 66
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 29.1 bits (62), Expect = 2.7
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Frame = +1
Query: 82 VIIAAQARHTASLIFLHGLGDTGHGWASTI---AGIRG------PHVKVICPTASTMPVT 234
VI+A A +T L+ L G+G H + I A + G H+++ ST PVT
Sbjct: 298 VILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANLPGVGQNLQDHLEIYVQQESTQPVT 357
Query: 235 LNN--GFRMP--------SWFDLRT-LDATAPEDEEGIERATDLV 336
L N ++ P WF RT L A++ + G R+ D V
Sbjct: 358 LYNKSSWKFPHNMIKIGLEWFTNRTGLGASSHLETGGFARSDDTV 402
>U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical
protein F10D7.1 protein.
Length = 656
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 454 LAGVMSLSCWLPRHGYFPGGLKAPVDLPIFQAHG 555
LA + +S +L FPGGL+AP+ F G
Sbjct: 136 LAYAIPMSIYLAIFTIFPGGLRAPIAFAFFNREG 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,176
Number of Sequences: 27780
Number of extensions: 307086
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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