Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11f01
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 31 0.22
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 0.51
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 29 0.68
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 27 2.1
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 27 2.1
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 27 2.7
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 4.8
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 25 8.3
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.3
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 25 8.3
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 25 8.3
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 30.7 bits (66), Expect = 0.22
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 45 IMASKFKSEKIGIVGSGLIGRSWA--MLFASVGYQVTVYDVVAKQITDAIEDIKY 203
+ +S FKS KI IVG+G +G + A +L + + ++ + D+ K+ D+ +
Sbjct: 13 VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNH 67
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 501 YYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 638
Y ++++VP P +PE K + + E + V++ E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 29.1 bits (62), Expect = 0.68
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 57 KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVV 164
+ + + +GI+G G IG ++L ++G V YD++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 72 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
++GI+G G +GR +A + G++V V D
Sbjct: 6 QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 69 EKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
+++GI+G G IG+S+A +G ++ ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEIVYHN 189
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 30 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 158
V+ST ++ +K+ ++G G+IG +++ +G +VTV +
Sbjct: 205 VSSTGALSLSEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVVE 247
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 567 WFS*QLQA*SRVLGQFQQGVRNKVDSPDEKQ 475
W+S + A S VL QF++ R + S EK+
Sbjct: 1553 WYSVESNATSHVLQQFEEACRKALSSSAEKR 1583
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 267 QCIKGSTDLETAVKGAIFVQECV 335
QCIKG+ ++TAV+ A + V
Sbjct: 42 QCIKGNVPIKTAVRSATILPRMV 64
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/28 (28%), Positives = 21/28 (75%)
Frame = +3
Query: 321 VQECVPENLDLKKKVFQNLDSVVDDNTI 404
++ +P + L KK+F+N ++VV+++++
Sbjct: 1294 IRASLPTLICLSKKIFENAENVVENHSL 1321
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 110 MGDVVCLSWLSGYC 151
MG VVC WL G C
Sbjct: 49 MGSVVCKHWLRGLC 62
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 253 LANNFNV*KGLRIWKPQLKELYLFRNVFQRILTLKKRCSRISTA*LTITRYYQVQQVLLC 432
L + FN G + + + LF+ + +++LTL+ +C + L Y Q Q++
Sbjct: 197 LTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKCCYLKQI-LQAVAYLQSQRIA-- 253
Query: 433 HHYSLKD*NI 462
H LK NI
Sbjct: 254 -HRDLKPENI 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,741
Number of Sequences: 5004
Number of extensions: 65988
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -