Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e22
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...   107   2e-24
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    58   9e-10
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    58   9e-10
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   2.0  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   2.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   8.1  

>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score =  107 bits (257), Expect = 2e-24
 Identities = 51/92 (55%), Positives = 62/92 (67%)
 Frame = +2

Query: 335 KKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAYIPGIGHNLQ 514
           K  K    L G+PF +GV  +    KPKKPNSA RK   VRLS G+ + AYIPGIGHN Q
Sbjct: 37  KTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRLSTGRSVTAYIPGIGHNAQ 96

Query: 515 EHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHV 610
           EH VVL+R GR +DCPGV+   VRG +D++ V
Sbjct: 97  EHAVVLLRGGRAQDCPGVQYHVVRGVYDIAGV 128


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 12/102 (11%)
 Frame = +2

Query: 353 NPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIP--GIGHNLQEHN 523
           +P  G+  AKG+V++ +  + K+PNSA RKCV V+L  NGK++ A++P  G  + + E++
Sbjct: 39  SPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDEND 98

Query: 524 VVLV----RVGRLK-DCPGVKLKCVR----GKHDLSHVIKQK 622
            VL+    R G+ K D PGV+ K V+    G   L H  K+K
Sbjct: 99  EVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 12/102 (11%)
 Frame = +2

Query: 353 NPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIP--GIGHNLQEHN 523
           +P  G+  AKG+V++ +  + K+PNSA RKCV V+L  NGK++ A++P  G  + + E++
Sbjct: 39  SPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDEND 98

Query: 524 VVLV----RVGRLK-DCPGVKLKCVR----GKHDLSHVIKQK 622
            VL+    R G+ K D PGV+ K V+    G   L H  K+K
Sbjct: 99  EVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -1

Query: 570 FTPGQSFNLPTLTRTTLCSCKLCPMPG 490
           F PG  F L T   T L    LC  PG
Sbjct: 405 FRPGSDFTLATTNDTALLEATLCLSPG 431


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 320 TGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRK 442
           T P    R S  P+   P++    L  V KKP KP+   +K
Sbjct: 128 TDPLYFDRASSKPVLQFPYSSVAALTPVPKKPSKPSKPRKK 168


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 452 VRLSNGKEMVAYIPGIGHNLQEHNVVL 532
           + LS+GKE+V Y+  +GH  +   V +
Sbjct: 432 ISLSHGKEIVRYLRSLGHEKEGQGVFM 458


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 130 SSKDESYKKRNVAPISRLQDTV--HNSQSNSTGGFNKTNRAIVQFSNSPN 273
           SS    +KK +   +S+  + +  HNS+  S+G F  T+ +    SNSP+
Sbjct: 27  SSFSSFFKKSSQTYLSKRSEKLNEHNSKLKSSGSF--TSNSQTDLSNSPS 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,559
Number of Sequences: 5004
Number of extensions: 60307
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)