Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11e22
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 57 2e-08
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 57 2e-08
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 46 2e-05
08_01_0337 - 2994086-2995489 30 2.1
12_01_0232 - 1746434-1746516,1747170-1747264,1747331-1747434,174... 29 3.6
11_01_0235 - 1807448-1807709,1807818-1807921,1809133-1809228,180... 29 3.6
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698... 29 3.6
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 29 4.8
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 28 8.4
05_01_0534 - 4601844-4602297,4602689-4602847,4602947-4603514,460... 28 8.4
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +2
Query: 350 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 520
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ A++P G + ++E+
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 521 NVVLVR-VGR----LKDCPGVKLKCVR 586
+ VL+ GR + D PGV+ K V+
Sbjct: 97 DEVLIAGFGRKGHAVGDIPGVRFKVVK 123
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +2
Query: 350 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 520
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ A++P G + ++E+
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 521 NVVLVR-VGR----LKDCPGVKLKCVR 586
+ VL+ GR + D PGV+ K V+
Sbjct: 97 DEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +2
Query: 350 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 520
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ A++P G + ++E+
Sbjct: 207 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 266
Query: 521 NVVLVR-VGR----LKDCPGVKLKCVR 586
+ VL+ GR + D PGV+ K V+
Sbjct: 267 DEVLIAGFGRKGHAVGDIPGVRFKVVK 293
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +2
Query: 350 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVAYIPGIG--HNLQEH 520
+ P G+ AKG+VL+ + + K+PNSA KC V+L NGK++ A++P G + ++E+
Sbjct: 108 KKPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKEN 167
Query: 521 NVVLV 535
V V
Sbjct: 168 EVAYV 172
>08_01_0337 - 2994086-2995489
Length = 467
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 602 TSRACLAHTLVSR-RDNLLTFPL*PGPRCVPV 510
TS CLA +L+ R R + PL PGPR VPV
Sbjct: 10 TSLLCLACSLLLRARASAAAAPLPPGPRTVPV 41
>12_01_0232 -
1746434-1746516,1747170-1747264,1747331-1747434,
1748677-1748772,1748860-1748919
Length = 145
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 532 GQSGKVKRLSRRETKVCARQARLVARHQTEGVG*EG 639
G+SG +KR+ R + +V LV +H +G G G
Sbjct: 30 GESGLIKRVIRSQNRVIVEGKNLVKKHIKQGEGHTG 65
>11_01_0235 -
1807448-1807709,1807818-1807921,1809133-1809228,
1809323-1809382
Length = 173
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 532 GQSGKVKRLSRRETKVCARQARLVARHQTEGVG*EG 639
G+SG +KR+ R + +V LV +H +G G G
Sbjct: 30 GESGLIKRVIRSQNRVIVEGKNLVKKHIKQGEGHTG 65
>06_02_0248 +
13468100-13468336,13468426-13468569,13469044-13469808,
13470272-13470564,13470642-13470833,13471151-13471229,
13471339-13471431,13471519-13471704
Length = 662
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +2
Query: 326 PHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVAY----IP 493
P KRK++ A VV T + KPKK K +L++ + E + +P
Sbjct: 83 PRRSKRKAQAATEPEAEATAVVRTTALSKPKKRRGERGKNMLLKEAKQDEEMEKAGKPVP 142
Query: 494 GIGHNLQEHNVVLVR 538
HN Q N V R
Sbjct: 143 MKNHNPQSRNWVRAR 157
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 476 MVAYIPGIGHNLQEHNV-VLVRVGRLKDCPGVKLKCVR 586
+V+++PG H L E + L+++G KD P KL+ V+
Sbjct: 1475 LVSFVPGTNHQLSEACIGALIKLG--KDRPNCKLEMVK 1510
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 470 KEMVAYIPGIGHNLQEHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHVI 613
K+ +A++ GH+L+EH V R+ D V G +DLS ++
Sbjct: 660 KKSIAFLSRQGHDLREHRRRGVSPRRVYDGRSVTWLAYHGDYDLSFLL 707
>05_01_0534 -
4601844-4602297,4602689-4602847,4602947-4603514,
4604853-4605246
Length = 524
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = -3
Query: 508 VMSDAGYIRHHFLAV*QSYQNAFTVRGVRFLRFFYYGL*NDTLSEGIPVKRIPRFPLLNV 329
V DAG H F + + Y ++ G R L F+ L P R +
Sbjct: 309 VWPDAGDDYHRFCSAMEEYDSSMRALGERLLAMFFKAL--GLAGNDAPGGETER-KIRET 365
Query: 328 RSSSVHLGQRRHCPRDEASLG 266
+S++HL CP + +G
Sbjct: 366 LTSTIHLNMFPRCPDPDRVVG 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,577
Number of Sequences: 37544
Number of extensions: 409731
Number of successful extensions: 1128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -