Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e22
         (711 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    29   0.19 
AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram nega...    27   0.58 
AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram nega...    27   0.58 
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   7.2  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 201 VVHCVLKPR--DRSDIPLLIRFIFT*LLCFILY 109
           +++C + P   + S +PL I FIF  LL F+L+
Sbjct: 34  LIYCFVSPSCLECSSVPLFINFIFMFLLHFVLF 66


>AJ001042-1|CAA04496.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 0.58
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 273 LASSRGQWRLWPRCTELDLTLRRGNLGIRLTGI 371
           L   R  +  WP   E+DL   RGN  + L G+
Sbjct: 196 LLPKRNAYGTWPASGEMDLMESRGNENLYLDGV 228


>AF081533-1|AAD29854.1|  395|Anopheles gambiae putative gram
           negative bacteria bindingprotein protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 0.58
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 273 LASSRGQWRLWPRCTELDLTLRRGNLGIRLTGI 371
           L   R  +  WP   E+DL   RGN  + L G+
Sbjct: 196 LLPKRNAYGTWPASGEMDLMESRGNENLYLDGV 228


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 529  PGQSGKVKRLSRRETKVCARQARLVARHQ 615
            P       R S R   + AR ARL  RH+
Sbjct: 1074 PSMPSSSPRTSERRANIRARMARLRQRHR 1102


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,074
Number of Sequences: 2352
Number of extensions: 15519
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)