Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e22
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.31 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.31 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.93 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.0  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 486 YATISLPFDNLTRTHLRFAEFGFLGFFITVFRTTPLAK 373
           Y TIS P D    +        F  F++T F   PL K
Sbjct: 155 YRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLK 192


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 486 YATISLPFDNLTRTHLRFAEFGFLGFFITVFRTTPLAK 373
           Y TIS P D    +        F  F++T F   PL K
Sbjct: 155 YRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLPLLK 192


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 116 IKHNNQVKMNLIRRGMSLLSLGFKTQCTTLR 208
           +KH+N VK+ +I +G SL  +  +   TTL+
Sbjct: 114 LKHSNIVKVLMIEQGASLSLITMELCGTTLQ 144


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 329 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMV 481
           H+K  ++   L     AK  V K    KP KP +  +      +S+ K  +
Sbjct: 222 HVKSIRAVTKLPDTSMAKSFVRKVHATKPPKPQTKTKPTSPYHVSDHKAAI 272


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 461 SNGKEMVAYIPGIGHNLQEH 520
           S G  +V  +PG+G NL  H
Sbjct: 343 SLGIPVVVDLPGVGENLHNH 362


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 200  TLRAIQPAASTKPIVPSSSFLTAQTGLISRAMASL 304
            TLR I     T P+ P +  LT  T  +S  +AS+
Sbjct: 901  TLRKIAQNRGTNPLAPDAVDLTQLTS-VSEWLASI 934


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 52  WPEQLKPNLTAQL 14
           WPE+L+P    QL
Sbjct: 178 WPEELEPGTPCQL 190


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 52  WPEQLKPNLTAQL 14
           WPE+L+P    QL
Sbjct: 178 WPEELEPGTPCQL 190


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 546 LPTLTRTTLCSCKLCPMPGIYATISL 469
           +P+L  T +     CP P  Y+ I +
Sbjct: 621 IPSLNSTNVTLSTKCPYPSYYSYIGV 646


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 52  WPEQLKPNLTAQL 14
           WPE+L+P    QL
Sbjct: 178 WPEELEPGTPCQL 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,123
Number of Sequences: 438
Number of extensions: 4836
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)