Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e19
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF249745-1|AAF79955.1|  720|Homo sapiens RhoGEF protein.               30   8.8  
AC009477-1|AAX93134.1|  547|Homo sapiens unknown protein.              30   8.8  
AB042199-1|BAB11941.1|  619|Homo sapiens APC-stimulated guanine ...    30   8.8  
AB029035-1|BAA83064.1|  694|Homo sapiens KIAA1112 protein protein.     30   8.8  

>AF249745-1|AAF79955.1|  720|Homo sapiens RhoGEF protein.
          Length = 720

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 234 EVLRPRFSSD--HLKE*GATTEACFLDTWEEPRLLAAYCCLYPNVCV 100
           + L  RF+ +  HL E GA    CFL+   + ++ + YC  +PN CV
Sbjct: 312 KALEQRFNRERPHLSELGA----CFLEHQADFQIYSEYCNNHPNACV 354


>AC009477-1|AAX93134.1|  547|Homo sapiens unknown protein.
          Length = 547

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 234 EVLRPRFSSD--HLKE*GATTEACFLDTWEEPRLLAAYCCLYPNVCV 100
           + L  RF+ +  HL E GA    CFL+   + ++ + YC  +PN CV
Sbjct: 202 KALEQRFNRERPHLSELGA----CFLEHQADFQIYSEYCNNHPNACV 244


>AB042199-1|BAB11941.1|  619|Homo sapiens APC-stimulated guanine
           nucleotide exchange factor protein.
          Length = 619

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 234 EVLRPRFSSD--HLKE*GATTEACFLDTWEEPRLLAAYCCLYPNVCV 100
           + L  RF+ +  HL E GA    CFL+   + ++ + YC  +PN CV
Sbjct: 274 KALEQRFNRERPHLSELGA----CFLEHQADFQIYSEYCNNHPNACV 316


>AB029035-1|BAA83064.1|  694|Homo sapiens KIAA1112 protein protein.
          Length = 694

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 234 EVLRPRFSSD--HLKE*GATTEACFLDTWEEPRLLAAYCCLYPNVCV 100
           + L  RF+ +  HL E GA    CFL+   + ++ + YC  +PN CV
Sbjct: 369 KALEQRFNRERPHLSELGA----CFLEHQADFQIYSEYCNNHPNACV 411


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,993,771
Number of Sequences: 237096
Number of extensions: 1895439
Number of successful extensions: 8572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8567
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)