Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e11
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489...    30   1.4  
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140...    27   9.7  
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    27   9.7  

>01_01_0645 +
           4890647-4890682,4891684-4891929,4892021-4892317,
           4892407-4892574,4892674-4892841,4892924-4893004,
           4893105-4893171,4893657-4893751,4894027-4894099,
           4894177-4894247,4894325-4894374,4895263-4895375,
           4895461-4895513
          Length = 505

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 442 YYVWFLGAQESRGLRGEEFALPAITLLEERARELEPFKVTLQVSHKGLKIIQNVT 606
           ++ W  GA+ S  L   +F LP +T+       +EP K  +     G+KI    T
Sbjct: 40  FWTWLTGAR-SNALPPPDFTLPGVTIPPPLPDLVEPGKTKITTLANGVKIASETT 93


>03_05_0284 -
           22712390-22712899,22712978-22713304,22713742-22714091,
           22714176-22714401,22714655-22714728,22715813-22716152
          Length = 608

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 501 ATGDHVTRGESKGVGTLQGYVAGFT*RPENNTECNSQGKTADDQ 632
           ATGD   RG+++G GT     AG   R   +  C S   TA  Q
Sbjct: 2   ATGDEAARGQARGDGT-GDTTAGRGSRRRRHARCGSGMATATAQ 44


>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 110 YVLIIINTTLIGLAFEY--KLLESFGIDKSLFFVCKDSVTKVQIASYKV 250
           YVL+++++  I L  E+  K    + I   LF+ C+ ++ KV+  +Y+V
Sbjct: 484 YVLLVVHSYFIFLTREWYKKTTWMYLIVPVLFYACERTIRKVRENNYRV 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,113
Number of Sequences: 37544
Number of extensions: 257717
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)