Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e11
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              27   0.16 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.5  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 259 KKKHFVTRNLNFRNTVLANEKQTFINTKAF*KFVFKCQSN*CCVDNNQNIKLVSFFSFCI 80
           KK  FV ++ NF   V     + F+N     + + +C +     D N ++K+   F  CI
Sbjct: 68  KKFSFVDKDGNFNEHVSREIAKIFLNENEINQLITECSA---ISDTNVHLKITKIFQ-CI 123

Query: 79  T 77
           T
Sbjct: 124 T 124


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 384 HCWITSIMSNCKWKNSKSEFA 322
           +CW+T I ++   K + SEFA
Sbjct: 55  NCWVTQIWTDHHLKWNASEFA 75


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 462 PEEPNVIRRFLDIL--FKSQRHFV 397
           PE  NV+R+F D+L  F   +H +
Sbjct: 261 PETYNVVRKFRDVLDEFPQPKHML 284


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 462 PEEPNVIRRFLDIL--FKSQRHFV 397
           PE  NV+R+F D+L  F   +H +
Sbjct: 261 PETYNVVRKFRDVLDEFPQPKHML 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,798
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)