Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e06
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410...    30   1.6  
02_05_0294 + 27609656-27611305                                         28   5.0  

>02_05_0076 +
           25637752-25639062,25639221-25639297,25640962-25641095,
           25641178-25641242,25641431-25641482,25641912-25641994,
           25642128-25642221,25642332-25642861
          Length = 781

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 275 KVSACKYILNSELVNFSEKSYIFIYCCND 361
           ++SAC  +    L++ SE S+++++ CND
Sbjct: 613 QISACSAVKGRYLISASEDSHVYMWRCND 641


>02_05_0294 + 27609656-27611305
          Length = 549

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 58  HLPAYFCREAVMRIGLKGRAALVTILRP*NLYLKMSGGIYVVDVY 192
           HLP  +   +V+ +G+KG  AL ++L   NL L + G I+   V+
Sbjct: 246 HLPINYVAVSVLGLGIKG-VALASVLANLNLVLFLFGYIWFKGVH 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,999,555
Number of Sequences: 37544
Number of extensions: 264897
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)