Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11e04
         (112 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   3.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   7.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    18   9.8  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 27  CDFTEIDVNIYSHYTCL 77
           CD  E    +Y  YTC+
Sbjct: 560 CDQCEEYEYVYDEYTCM 576


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 99  FKYVYNYIDRYSDYIY 52
           +KYV   IDR   YI+
Sbjct: 471 WKYVAMVIDRLQLYIF 486


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +3

Query: 12 CDRM*CDFTEIDVNIYSHY 68
          C+R+ C    +  +IY+++
Sbjct: 41 CERVYCSRNSLMTHIYTYH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,699
Number of Sequences: 438
Number of extensions: 191
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)