Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d23
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|...    25   2.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   3.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   3.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   6.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    24   6.5  

>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
           Arc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 119 QQSLRVGEQILILSRPL*NTESIAENVCFEVTSSSVKRPMSVREIDE 259
           Q  + VG    IL +PL  + +  E    E + +SV+  + ++++DE
Sbjct: 35  QPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDE 81


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 258  SSISLTDIGLLTELDVTSKQTFSAID-SVFYKGLESI 151
            +++SLT +GL   +  T K  FS  D S  Y  +E +
Sbjct: 971  ANVSLTAVGLFWNVSDTLKNMFSTSDFSCAYNSVEDL 1007


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 119  QQSLRVGEQILILSRPL*NTESIAENVCFEVTSSSV 226
            QQ LR   +IL  ++ L   +   +NVC+++ S +V
Sbjct: 1205 QQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNV 1240


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 321 FFVIHFYFDYLYNLFICL 268
           F ++ F FDYL   FICL
Sbjct: 422 FVLVAFPFDYLPARFICL 439


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 312 IHFYFDYLYNLFICLTYFSSISLTDIGLLTELDV 211
           IH+Y D +Y LFI   Y + I L    L+ +L V
Sbjct: 693 IHYYVDSMYALFI---YSTDIPLKAEPLVPDLPV 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 936,006
Number of Sequences: 5004
Number of extensions: 13098
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)