Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11d23
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0470 + 3645010-3647686,3647804-3648168 29 0.84
07_01_0315 + 2222828-2223014,2223366-2223604,2224423-2224602,222... 28 1.5
11_06_0305 + 22209640-22209736,22212679-22212941,22213444-222135... 27 2.6
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 27 2.6
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 27 2.6
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 27 4.5
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 26 5.9
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 26 5.9
05_01_0331 - 2595789-2596160 26 5.9
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 29.1 bits (62), Expect = 0.84
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 291 LYNLFICLTYFSSISLTDIGLLTEL 217
LY L I L YF+ I T IG LTEL
Sbjct: 290 LYMLDIALNYFTGIIPTSIGKLTEL 314
>07_01_0315 +
2222828-2223014,2223366-2223604,2224423-2224602,
2224644-2224652
Length = 204
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 309 HFYFDYLYNLFICLTYFSSISLTDIGLLTELDV 211
HF FD + L I LTYF +I+ DI L+ ++ V
Sbjct: 125 HFQFDAIPRLSILLTYFPTIN-GDIYLMEDMTV 156
>11_06_0305 +
22209640-22209736,22212679-22212941,22213444-22213530,
22214866-22214937,22215729-22215793,22215918-22216050,
22216397-22216477,22216599-22216688,22217954-22218103
Length = 345
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 256 VYFPYRHRSFDRTRCNLKTNIFCD 185
+Y PY HR+ + CN K +I C+
Sbjct: 146 IYLPYAHRACVQRWCNEKGDITCE 169
>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
Length = 1000
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 228 LTELDVTSKQTFSAIDSVFYKGLESIRICS 139
L ELDV Q F+A +S+ + L+ +++C+
Sbjct: 735 LEELDVAGYQIFNASESLSMRTLKELKLCN 764
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 324 FFFVIHFYFDYLYNLFICLTYFSSISLTDIGLLTELDVTS--KQTFSAIDSVF 172
F + + +F YL+ +F L YF+ + +GL V S F AI ++F
Sbjct: 1301 FQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLF 1353
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 110 VDPQQSLRVGEQILILSRPL*NTESIAENVCFEVTSSSVKRPMS 241
V PQ+++ ++ +S + N ES+ + VKRPMS
Sbjct: 182 VTPQKAIHKDGNVVGVSSAVHNLESLRHKIAARENELKVKRPMS 225
>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 303 YFDYLYNLFICLTYFSSISLTDIGLLTELDVTS--KQTFSAIDSVF 172
+F YL+ ++ L+Y++ + +GL +V S F AI ++F
Sbjct: 1203 FFWYLFFMYFTLSYYTFYGMMSVGLTPSYNVASVVSTAFYAIWNLF 1248
>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 303 YFDYLYNLFICLTYFSSISLTDIGLLTELDVTS 205
+F YLY ++ L YF+ + +GL ++ S
Sbjct: 1368 FFWYLYFMYFTLLYFTFYGMLAVGLTPSYNIAS 1400
>05_01_0331 - 2595789-2596160
Length = 123
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 141 NKFLYFQGPYKILNLSQKMFVLRLHLVLSKD 233
+ L F+G ++NLS + +L LH +L+ +
Sbjct: 79 SSLLVFKGHSLVMNLSHSLLLLNLHALLADE 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,295,940
Number of Sequences: 37544
Number of extensions: 65036
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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