Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d23
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    28   1.8  
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    27   3.1  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    27   3.1  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    27   3.1  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    27   3.1  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    27   3.1  
Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical p...    26   5.4  
AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical...    26   5.4  
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    26   7.2  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    26   7.2  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    26   7.2  
Z84712-2|CAB06546.2|  551|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81130-13|CAB03421.2|  551|Caenorhabditis elegans Hypothetical p...    25   9.5  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 321 FFVIHFYF---DYLYNLFICLTYFSSIS 247
           F  +H+YF    Y+YN FI L  FS I+
Sbjct: 99  FHFLHYYFAYAQYIYNFFISLNRFSLIT 126


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 321 FFVIHFYF---DYLYNLFICLTYFSSIS 247
           F  +H+YF    Y+YN FI L  FS I+
Sbjct: 99  FHFLHYYFAYAQYIYNFFISLNRFSLIT 126


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 309 HFYFDYLYNLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLE 157
           + YF+YL N+F   T F +  LT   +L       K+ F    S+  +G E
Sbjct: 266 NLYFEYLLNIFGSFTAFINPLLTFYFVLPYRRALCKKVFKYFPSISEEGTE 316


>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
           protein 73, isoform b protein.
          Length = 1638

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 297 DYLYNLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICS 139
           D L N+F+ L   +S    + G L  +D+  KQT++ +  +  K L SI   S
Sbjct: 50  DNLRNVFLYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHIL-KALSSIESSS 101


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
           protein 73, isoform f protein.
          Length = 2140

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 297 DYLYNLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICS 139
           D L N+F+ L   +S    + G L  +D+  KQT++ +  +  K L SI   S
Sbjct: 50  DNLRNVFLYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHIL-KALSSIESSS 101


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
           protein 73, isoform a protein.
          Length = 2488

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 297 DYLYNLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICS 139
           D L N+F+ L   +S    + G L  +D+  KQT++ +  +  K L SI   S
Sbjct: 50  DNLRNVFLYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHIL-KALSSIESSS 101


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73B protein.
          Length = 1638

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 297 DYLYNLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICS 139
           D L N+F+ L   +S    + G L  +D+  KQT++ +  +  K L SI   S
Sbjct: 50  DNLRNVFLYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHIL-KALSSIESSS 101


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73A protein.
          Length = 2488

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 297 DYLYNLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICS 139
           D L N+F+ L   +S    + G L  +D+  KQT++ +  +  K L SI   S
Sbjct: 50  DNLRNVFLYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHIL-KALSSIESSS 101


>Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = -2

Query: 285 NLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSV-FYKGLESIRI 145
           ++F+C  YFS ISL+ IG L ++ + +  TFS I S+ F+ G+   ++
Sbjct: 315 SVFLCF-YFSFISLSTIG-LGDI-MPNNATFSPIISIMFFFGMALTKV 359


>AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = -2

Query: 285 NLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSV-FYKGLESIRI 145
           ++F+C  YFS ISL+ IG L ++ + +  TFS I S+ F+ G+   ++
Sbjct: 315 SVFLCF-YFSFISLSTIG-LGDI-MPNNATFSPIISIMFFFGMALTKV 359


>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
           resistance related protein2 protein.
          Length = 1525

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 321 FFVIHFYFDYLYNLFICLTYFSSISLTDIGLLTELDVT 208
           F V+HFY D +    ICL    +++  + G++T   +T
Sbjct: 104 FEVVHFYGDLVQFGGICLALILTVACKNKGIITSGVIT 141


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 2 protein.
          Length = 1525

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 321 FFVIHFYFDYLYNLFICLTYFSSISLTDIGLLTELDVT 208
           F V+HFY D +    ICL    +++  + G++T   +T
Sbjct: 104 FEVVHFYGDLVQFGGICLALILTVACKNKGIITSGVIT 141


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 252  ISLTDIGLLTELDVTS-KQTFSAIDSVFYKGLESIRICSPTLRDCCG 115
            +SL   G + E  V S  +TF   D    K +  I++  P L  C G
Sbjct: 948  LSLCSKGAICEKGVCSCPETFFESDGACVKNVAKIKVVVPPLSSCLG 994


>Z84712-2|CAB06546.2|  551|Caenorhabditis elegans Hypothetical
           protein T24B1.1 protein.
          Length = 551

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 321 FFVIHFYFDYLYNLFICLTYFSSI 250
           FFV++F   +L+  FI LTY   I
Sbjct: 527 FFVLYFIIMHLWLFFIVLTYTPEI 550


>Z81549-6|CAB04475.1|  523|Caenorhabditis elegans Hypothetical
           protein F55C9.7 protein.
          Length = 523

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -2

Query: 291 LYNLFICLTYFSSISLTDIGLLTELDVTSKQTFSAIDSVFYKGLESIRICS 139
           LYN   CLT    IS + I   T     S      I S+    L SI IC+
Sbjct: 263 LYNAIRCLTPREIISFSLISKFTLQTAESLNLQDRISSIEIHELVSIEICN 313


>Z81130-13|CAB03421.2|  551|Caenorhabditis elegans Hypothetical
           protein T24B1.1 protein.
          Length = 551

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 321 FFVIHFYFDYLYNLFICLTYFSSI 250
           FFV++F   +L+  FI LTY   I
Sbjct: 527 FFVLYFIIMHLWLFFIVLTYTPEI 550


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -2

Query: 321 FFVIHF---YFDYLYNLFICLTYFSSI 250
           F   HF   Y  Y++N F+C   F++I
Sbjct: 96  FHTFHFEFAYTQYIFNCFVCANRFTAI 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,133,023
Number of Sequences: 27780
Number of extensions: 71822
Number of successful extensions: 245
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)