Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d15
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   0.91 
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    27   2.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   3.7  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   4.9  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   6.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   6.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   8.5  

>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 507 NFNKEINEDEETSSITINIKKDPTENY 587
           NF+ E +E+E + S  +++ KDP E Y
Sbjct: 32  NFSTEKSENEASESHVVDVVKDPFEQY 58


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 306 RPSPNFRLMKKYLKFKFGEESHSPQYHGVAEIPEAEAMKR--KKHEQTEKV 452
           R +P    + KYLK+    +SH  QYH    + E     R  K+ +Q E++
Sbjct: 32  RSTPRVSGIAKYLKYA---QSHDQQYHPTESLEEKRLRLRDEKQKQQRERL 79


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 155  LTSVSDTDLYQIYWLKFKLR---LPRRRQLHRTIAHM 256
            L S +  DLY++ WLK +     L RR    RT+A M
Sbjct: 2093 LLSTTGQDLYRVLWLKSRSSEAWLNRRTNYSRTLAVM 2129


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +3

Query: 390 VAEIPE-AEAMKRKKHEQTEKVHXXXXXXXXXXXXXXXXANFNKEINEDEETSSITINIK 566
           V +IPE AEA    K+ +                     A  +KEI+  EE+  +    +
Sbjct: 127 VKKIPEYAEAFDTTKNVEVSSFPEKSMNENVLIQHSLNLAPSDKEISSTEESEQLCYKEQ 186

Query: 567 KDPTENYEKPND 602
           +   E Y K ND
Sbjct: 187 ESEKELYSKDND 198


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/71 (21%), Positives = 30/71 (42%)
 Frame = +3

Query: 219 LDDGNYTGQLHI*GNTKFPSIGDEDSVNFRPSPNFRLMKKYLKFKFGEESHSPQYHGVAE 398
           + D   T +LHI   T+  ++ D  S+N      + L+  +L   +       Q+   ++
Sbjct: 272 VSDATVTKRLHIINPTEIKNLLDSKSINLSLVSKYLLVSAFLA-SYNPSRLDAQFFSFSK 330

Query: 399 IPEAEAMKRKK 431
             +    KRK+
Sbjct: 331 TSKRRGRKRKQ 341


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 340 YFFISLKFGDGRKLTESSSPILGN--FVLPHMC 248
           YFF+SL F D   +  +  P L N  F+  H+C
Sbjct: 672 YFFLSLSFRDPILVLSTMKPYLCNITFLGSHLC 704


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 54  SSLPVLTMCSIAAPYATISPRP---SLCAAALP 143
           SS P +   + AAP AT +P P   S  AAALP
Sbjct: 109 SSTPKVETAAAAAPAATPAPAPAQTSAPAAALP 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,620
Number of Sequences: 5004
Number of extensions: 46220
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)