Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d15
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    29   1.9  
U40423-4|AAA81453.2|  243|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 430 NMSRQRRFIHHYLTAHRCRRRNHSLQISIRKSMKTRRHLQSP 555
           ++ ++R +  H +T   CR   H   ISI K++ T +    P
Sbjct: 283 DLDQKRFYFAHKVTTKTCRNNRHFFNISIGKNLVTSKQNNRP 324


>U40423-4|AAA81453.2|  243|Caenorhabditis elegans Hypothetical
           protein C24H10.1 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 41  QYSAIKSTCIDDVQYRCALRYDFATPITLRRRITDPGRLTSVSDTDLYQIY-WLKFKL 211
           Q   +KS   DD+   C  ++D +    +   I D  + ++  +++ +Q + W KF L
Sbjct: 61  QLHLVKSQNKDDLPLHCTYKFDISATQIIDENIEDIDQNSAAGESEHHQFFGWHKFTL 118


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
           protein R09A8.1 protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 418 IASASGISATP*YWGE*LSSPNLNFKYFFISLKFGDGRKLTESSSPILGNFVLPHMCN 245
           I+S SG S  P +W +   + +LNFK   +S K    RK  +  S  +  F   H+ N
Sbjct: 745 ISSTSGDS-DPEWWSDRELTADLNFKRELLSKKPRFSRKTFDERSSYIARFKESHLGN 801


>AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical
           protein Y81B9A.2 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 418 IASASGISATP*YWGE*LSSPNLNFKYFFISLKFGDGRKLTESSSPILGNFVLPHMCN 245
           I+S SG S  P +W +   +P+LN K   +  K    RK  +  S  + +F   H+ N
Sbjct: 107 ISSTSGDS-DPEWWSDRELTPDLNLKRELLLKKARFSRKTFDKRSSYIAHFKKSHLEN 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,284
Number of Sequences: 27780
Number of extensions: 263138
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)