Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d12
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-7|AAL06045.1|  165|Caenorhabditis elegans Hypothetical pr...   102   2e-22
AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical ...    35   0.057
Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>U00055-7|AAL06045.1|  165|Caenorhabditis elegans Hypothetical
           protein R02F2.9 protein.
          Length = 165

 Score =  102 bits (244), Expect = 2e-22
 Identities = 53/135 (39%), Positives = 83/135 (61%), Gaps = 2/135 (1%)
 Frame = +3

Query: 243 TTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDI 422
           +T   +   +  F+G IP +K++  Y+ SSGPGGQNV K  TKV++RFK+S+A+W+   +
Sbjct: 12  STRHIQASSSATFNGVIPTEKIEKRYTLSSGPGGQNVQKNATKVEIRFKVSEAEWLSESL 71

Query: 423 RQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMIR--DAEVTKREPSPETQ 596
           R  + E    ++   G LII SD TR + LN+ADC  KLR+ I   + E  KRE + + +
Sbjct: 72  RDLVEEKLSHRINTAGELIIDSDRTRERHLNVADCFDKLRSAIYAIENEQGKREMTEKDE 131

Query: 597 ERIRQRQLKAARLRV 641
           + +R+R   A + R+
Sbjct: 132 KILRERAAIATQHRL 146


>AF039041-6|AAB94190.1|  389|Caenorhabditis elegans Hypothetical
           protein W03F8.3 protein.
          Length = 389

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 273 EKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFK 389
           E+ S  +P   + I    +SGPGGQNVNK  T V +  K
Sbjct: 235 EEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRMTHK 273


>Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical
           protein K10D11.7 protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +3

Query: 150 NATCTALLQRPLGYKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKL--DISYS 323
           N+ CT L+  P  Y +++ L+    +      T   K +  EKF   + + +L    S+ 
Sbjct: 56  NSACTWLVNIPCNYTATVHLKATISDGGHVTMTQTPKMNKTEKFVNNMEVTRLFYPPSFD 115

Query: 324 ASSGPGGQNVNKVHTKVDLRFKLSDAD 404
               PG  +V  +  K  L+F+  D +
Sbjct: 116 IFWYPGASDVGNL--KFSLQFQTIDLE 140


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical protein
            F59F3.1 protein.
          Length = 1227

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 354  NKVHTKVDLRFKLSDADWIH---PDIRQRMLELYDKKLTKEGYLIIKS 488
            N +HT++  + KL D  WI    PD+     +   KK  +E YLI++S
Sbjct: 1180 NMLHTEMQEQSKLDD--WIQDSRPDVPNVSFQKSPKKQKEERYLIVES 1225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,244
Number of Sequences: 27780
Number of extensions: 264203
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)