Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d08
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      29   0.49 
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    29   0.49 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   2.0  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   4.6  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 3   WTVGTTRP*HRLHSRVPDHARCSAAATLASRL 98
           +T  T RP  RLH+ +  +A  SA+  LASRL
Sbjct: 190 YTTETIRPHVRLHNSLSTNAALSASVVLASRL 221


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 162 SSVKNRKIELSAVDEM--LATRSPSGWR-GLRLLSTGHGRELVSGGG 31
           +S +NRK+  S V  +  + T   S WR GLR ++ GH   LV  GG
Sbjct: 60  TSQENRKLSPSEVGPLSIVDTSDSSWWRTGLREIARGHVAALVLAGG 106


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 587 PFYYYACLICMCKNVY 540
           PF YY CL C CK+++
Sbjct: 545 PFAYYYCLQCECKSLH 560


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 118 DVSDAVPKRLARVAAAEHRAWSGTRE 41
           +V    PK+LAR A  ++ AWS  +E
Sbjct: 499 EVEKTEPKKLARPAKIKNEAWSKQKE 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,527
Number of Sequences: 5004
Number of extensions: 45725
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)