Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11d06
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 42 6e-05
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 29 0.84
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.9
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 27 2.6
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 2.6
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 3.4
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 27 3.4
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 27 3.4
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 26 4.5
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 42.3 bits (95), Expect = 6e-05
Identities = 30/118 (25%), Positives = 57/118 (48%)
Frame = +1
Query: 157 IERRSYLFTLEKKRQIENVGRIEKIEVQYKGIPKDCTLVMNKNISTPYDCARHLSEWHME 336
I+ R LF +K E++ + E+ +P + +TP A +S+ +
Sbjct: 23 IQHRLDLFDKLQKEYKESLATKPREEIDIT-LPDGKVIKGTSWETTPISIAASISKGLAD 81
Query: 337 SSVLALLDGNLHWDMHRPLTESCTLEFQNYKAAEPQQVNKAFWRTCSLMLGACATVAF 510
+A+++G WD+ RPL SCTL+ ++ E ++V FW + + +LG ++F
Sbjct: 82 RVTVAIVNGE-PWDLTRPLEASCTLKLCDFNDPEGKRV---FWHSSAHILGEATELSF 135
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 311 LAQSYGVEMFLFITKVQSFGMPLYWTSIFSIL 216
L ++YGVE+ F++ V +PL+ T+ +IL
Sbjct: 143 LLEAYGVEIVAFVSSVGKIAIPLHETASSAIL 174
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 88 KKLTEKSHFSTLQITRFLSTQEAIERRSYLFTLEKKRQIENVGRIEKIEVQYKGIPK 258
K L + S+FS L RFL+T I R ++K +IEN +KI+ +GI K
Sbjct: 3077 KHLGKTSYFSCLHFIRFLNTFCLIFGRDANKLSKEKSRIEN--GFKKIKETSQGIDK 3131
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 529 HLHSFPLPDIRSGSFIYDVDLPTLSD 606
HLH LPD+ + S+ +D+D +D
Sbjct: 55 HLHDTILPDVLAASYRHDIDTALSTD 80
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 500 PLHSRTQFQYTYTVFHCPT*EAVLSSMMSIF 592
PLH R +Y T + CPT + ++ S+F
Sbjct: 293 PLHQRCHEEYIRTNYRCPTCYKTIINVNSLF 323
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 523 PVHLHSFPLPDIRSGSFI 576
P HL +PLPD+++ F+
Sbjct: 160 PPHLRRYPLPDVKTSPFL 177
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 26.6 bits (56), Expect = 3.4
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 DNLVVSLKTFIYNKTKQ*MKMKRHVTCLMKKLTEKSHFSTLQITRF-LSTQEAIERRS-Y 174
D +V LK + N+ K +K + +++ S + L F L + IE Y
Sbjct: 93 DTIVKDLKKELENEKKANHSLKNELLKTREQIKNYSKINILIKELFGLEVADCIEDEDGY 152
Query: 175 LFTLEKKRQIENVGRIEKIEVQYKGIPKDCTLVMNKNISTPYDCARHLSEWHMESSVLAL 354
F + N GR +E Q ++ T N+ T + +HL ++ +E +
Sbjct: 153 RFNCK------NTGRRGTLEYQLLLDDQNFTFTPRLNVQTDEELMKHLPDYLLEEIIFTK 206
Query: 355 LDGNL 369
G L
Sbjct: 207 EQGKL 211
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 172 YLFTLEKKRQIENVGRIEKIEVQYKGIPKDCTLVMNKNISTPYDCA 309
YLF + K E G I+++ G+P C + + S P CA
Sbjct: 500 YLFFILDKNSPEPYGSIKRVCNTMLGVPSQCAISKHILQSKPQYCA 545
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 100 EKSHFSTLQITRFLSTQEAIERRSYLFTLE 189
E S S+ Q+T+FL+ + + RRSY +E
Sbjct: 322 EPSLSSSDQVTKFLALDKCLPRRSYFEVVE 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,687
Number of Sequences: 5004
Number of extensions: 66429
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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