Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d06
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.39 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.90 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 313 HLSEWHMESSVLALLDGNLHW-DMHRPLTES 402
           +LSE H+E    A + GNL W D+H    ES
Sbjct: 555 NLSENHIEWFDYAFIPGNLKWLDIHGNFIES 585


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 528 YWNCVLECNGSARSKHQRACA 466
           YWNCV++ N  A + HQ   A
Sbjct: 530 YWNCVIQYNTRAEN-HQTGTA 549


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 268 LVMNKNISTPYDCARHLSEWHMESSVLALLDGNLHW 375
           +++   + TP   A  L   H +SSV     G L W
Sbjct: 749 MMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGILFW 784


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 268 LVMNKNISTPYDCARHLSEWHMESSVLALLDGNLHW 375
           +++   + TP   A  L   H +SSV     G L W
Sbjct: 787 MMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGILFW 822


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 42  NKTINENETARYLFDEKTNRKKPFFHSTNNKIFK 143
           NKTI+ N   +Y ++        + ++ NN   K
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKK 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,667
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)