Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11d04
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 1.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 1.9
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.4
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.9
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 7.8
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -2
Query: 385 SVPYTNTAPHKNPPATGTNAYFPSSPYVSHISMAGFNSD-Q*EAAVMTPAANPNDKSSSF 209
S+P + +K+ PA+ ++ + PS P ++ + +SD + + A D ++
Sbjct: 70 SIPLCGSPRNKSRPASRSDRFIPSRPNTANAFVNSISSDVPFDYSESVAEACGFDLNTRV 129
Query: 208 LCFPLIKNTQPAPTAVSPQVNKVPKRACVT 119
L F L P + Q N+ P+R VT
Sbjct: 130 LAFKLDAPEAKKPVDLRTQHNR-PQRPVVT 158
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.5 bits (58), Expect = 1.9
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Frame = -2
Query: 388 LSVPYTNTAPHKNPPATGTNAYFPSSPYVSHIS----MAGFNSDQ*EAAVMTPAANPNDK 221
LS+ T +P P T +NA S+P V+ + ++ + +PAA PN
Sbjct: 394 LSLDATPFSPTLAPQHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTPGFPTSPAAKPNSP 453
Query: 220 SSSFLCFP-------LIKNTQPAPTAVSPQVNKVPKRACVTAPYPSI 101
+S+F FP + KNT P+AV VP + + AP P +
Sbjct: 454 TSTF--FPQSSFGQTIAKNTMDKPSAVR---TSVPSQ--LAAPIPQV 493
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = -2
Query: 391 NLSVPYTNTAPHKNPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSS 212
N VP T T + A+ T+ +P + S S + ++ + TP SSS
Sbjct: 49 NGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSS 108
Query: 211 FLCFPLIKNTQPAPTAVS 158
L I T P PT S
Sbjct: 109 ILSNSTIPTTSPVPTTSS 126
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 385 SVPYTNTAPHKNPPATGTNAYFPSS-PYVS-HISMAGFNSDQ*EAAVMTPAANPNDKSSS 212
S+PYT+T P + P T TN +S PY S ++ + + TP N +S+
Sbjct: 478 SIPYTST-PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTST 536
Query: 211 FLCF 200
+ +
Sbjct: 537 SVLY 540
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Frame = -2
Query: 385 SVPYTNTAPHKNPPATGTNAYFPSSPYVS-HISMAGFNSDQ*EAAVMTPAANPNDKSSSF 209
SV YT+T P AT S PY S ++ + + TP N +S+
Sbjct: 537 SVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTS 596
Query: 208 LCFPLIKNTQPAPTAVS 158
+ + T P T+ S
Sbjct: 597 VLYTSTPITSPNSTSSS 613
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 267 WSLLKPAIEMCDTYGEDGKYAFVPV---AGGFLCGAVFVYGTDRFLDYLGINSTN 422
WS+ KP + + + GK + + GG +CG FV+ DR +NS N
Sbjct: 116 WSIKKPQ-HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLN 169
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 358 HKNPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSSFL-CFPLIKNT 182
HKN ++ +S + +ISM NS+ A+ A +K+ + C P K
Sbjct: 494 HKNTSVANVSSKVANSKFERNISMMS-NSNASSPAIFEVGAEAKEKTKDAIPCHPDDKLM 552
Query: 181 QPAPTAVS 158
P+P V+
Sbjct: 553 IPSPKIVT 560
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -2
Query: 361 PHKNPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPNDKSSSFLCFPLIKNT 182
P K T++ P++ + G S Q +A +PA +P++++S F +T
Sbjct: 422 PEKPALPDATSSSTPTTENKESWTNQGIKSSQQRSANASPATSPSNQASIHASFTKESST 481
Query: 181 QPAPT 167
+P+
Sbjct: 482 HSSPS 486
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 411 NSTNMMISITKSKDSKEKLEDLEMMTALNRRPSVPTSVVTMESPQPA 551
N T + ++ + + + +L T + S PTSV+T SPQP+
Sbjct: 432 NHTEIRLAEQRMNEERRRLSAAATATPM----SAPTSVLTGTSPQPS 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,381
Number of Sequences: 5004
Number of extensions: 55763
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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