Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11d04
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0273 - 28857212-28857294,28857404-28858169 32 0.49
01_01_0463 - 3424951-3425065,3425191-3425258,3425362-3425586,342... 30 1.5
02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967... 29 2.6
08_02_0119 + 12782712-12783218 29 3.5
05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441 28 6.0
01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852 23 7.4
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 28 8.0
10_01_0026 - 351737-353443 28 8.0
03_05_1022 - 29756127-29756198,29756335-29756421,29756783-297569... 28 8.0
01_06_0891 - 32752825-32752932,32753085-32753176,32753293-327534... 28 8.0
>05_07_0273 - 28857212-28857294,28857404-28858169
Length = 282
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 393 LDYLGINSTNMMISITKSKDSKEKLEDLEMMTALNR----RPSVPTSVVTMESPQPAEFA 560
LD+ + + S++ S DS + DL+ + +L+R PS T + +P+ A
Sbjct: 44 LDFSSVRGASSSGSMSGSDDSDDDCTDLDFIISLHRSRSASPSYDTLFFAAAASEPSTKA 103
Query: 561 DCITNQHTAQRRRGHQSHNSLKIG 632
+ H +RRG +L G
Sbjct: 104 SFQPSHHFCAKRRGGGGLRTLSFG 127
>01_01_0463 -
3424951-3425065,3425191-3425258,3425362-3425586,
3425669-3425804,3425905-3426107,3426227-3426340,
3426432-3426506,3426625-3426783,3426868-3427038,
3427227-3427274,3427366-3427491,3427611-3427718,
3427800-3427913,3428320-3428496
Length = 612
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 540 PQPAEFADCITNQHTAQRRRGHQSHNSLKIGENGEGDHRDSISKSL 677
P A C T++ +R+RG ++++ + E+G G+ S K+L
Sbjct: 148 PDLRRIASCFTSEQREKRKRG-ADNDAMDVSESGSGETSSSSKKTL 192
>02_03_0285 -
17296164-17296203,17296406-17296524,17296572-17296742,
17298878-17298985,17299783-17299905,17300057-17300143,
17300765-17300884
Length = 255
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +3
Query: 222 LSLGFAAGVMTAASYWSLLKPAIEMCDTYGEDGKYAFVPVAGGFLCGAVFVYGTDR---- 389
L +G +T A +L P Y E + F+ F+C FV+ TD+
Sbjct: 166 LKMGEGMKALTDAHLCRMLCPDWPKA-CYREGAAHMFLKAKSFFICNNYFVFRTDKACDA 224
Query: 390 FLDYLGINSTNMMI 431
FLD L ++ NM I
Sbjct: 225 FLDGLKLDPANMEI 238
>08_02_0119 + 12782712-12783218
Length = 168
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 199 PLIKNTQPAPTAVSPQVNKVPKRACVTAPYPS 104
PLI N QP ++P V A V+AP P+
Sbjct: 135 PLITNNQPTAQPIAPNAPSVQPTAPVSAPAPA 166
>05_03_0473 - 14469110-14469232,14470246-14470452,14471034-14471441
Length = 245
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +3
Query: 186 FFIRGKHRKLLDLSLGFAAGVMTAASYWSLLKPAIEMCDTYGEDGKYAFVPVAGGF---L 356
FF + L G AAGVM AAS+ ++ YG F ++GGF L
Sbjct: 79 FFFLELEAQWAGLCNGLAAGVMLAASF-----DLVQEGQMYGSGSWVVFGILSGGFFIWL 133
Query: 357 CGAVF-VYGTDRFLDYLGINSTNMMISI 437
C YG LD G +++ +++ +
Sbjct: 134 CKKFLEQYGEVSMLDIKGADASKVILVV 161
>01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852
Length = 253
Score = 23.4 bits (48), Expect(2) = 7.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 181 QPAPTAVSPQVNKVPKRACVTAPYP 107
QP+PT S Q ++ K +T P P
Sbjct: 54 QPSPTTASGQQSQQQKVTLITLPPP 78
Score = 23.0 bits (47), Expect(2) = 7.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 250 MTPAANPNDKSSSFLCFPLIKNTQPAPTA 164
M+P+ P + F PL N P+P A
Sbjct: 1 MSPSPPPPHRGGLFSSTPLRSNGSPSPAA 29
>10_08_1023 -
22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 27.9 bits (59), Expect = 8.0
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 6/160 (3%)
Frame = +3
Query: 216 LDLSLGFAAGVMTAASYWSLLKPAIEMC-DTYGEDGKYAFVPVAGGFLCGAVFVYGTDRF 392
++L G + + + + PAI + D+YG+ GGF+ ++ + F
Sbjct: 165 IELLEGHSGDLRWCLDFRDMDSPAIILLGDSYGKR-----TAEGGGFVLCPLYGRKSKAF 219
Query: 393 LDYLGINSTNMMISITKSKDSKE----KLEDLEMMTALNRRPSVPTSVVTMESPQPAEFA 560
+ G +T ++ +TK+ +S +++ + MTA + V + E++
Sbjct: 220 MAASGSTNTLIISYLTKTANSMVGVSLHVDNSQSMTATDFIAKRANEAVGAAETRHGEWS 279
Query: 561 DCITNQHTAQRRRGHQSHNSLKIGENGE-GDHRDSISKSL 677
+T A SL IG G GDH DS+S+ L
Sbjct: 280 --VTRLRPAAHGTASIESLSLGIGPRGGLGDHGDSVSRQL 317
>10_01_0026 - 351737-353443
Length = 568
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -2
Query: 406 PR*SKNLSVPYTNTAPHKNPPATGTNAYFPSSPYVSHISMAGFNSDQ*EAAVMTPAANPN 227
P S +LS + +P PP TNA S+ VS + A +S+ + TP+A
Sbjct: 20 PSPSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPSSESSSESTTTPSAPAE 79
Query: 226 DKS 218
KS
Sbjct: 80 RKS 82
>03_05_1022 -
29756127-29756198,29756335-29756421,29756783-29756968,
29757088-29757188,29757379-29757484,29757564-29757638,
29757772-29757903,29771476-29771655,29772032-29772234,
29773296-29773602
Length = 482
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 501 RPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNSLKIGENGEG 647
RP +V PQP ++ H AQRRRG + + + G G
Sbjct: 6 RPGHHLPLVLPPLPQPPATTTSLSLNHLAQRRRGTPRRHVVVVSSAGGG 54
>01_06_0891 -
32752825-32752932,32753085-32753176,32753293-32753408,
32754055-32755969,32756037-32756171,32756549-32756870
Length = 895
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = -1
Query: 554 LSRLRGFHRHDTRRYRRSPVQSGHHFQIF*FLFRVF------AFGDTDHHISRINSKVV* 393
L RLR R D R+ RSPV H + F R+ A G T +H++RIN +
Sbjct: 779 LQRLR-LSRSDIIRWMRSPVM---HTTLDGFFLRLRFGKWEEALGGTGYHVARINGVLDK 834
Query: 392 EPVSSIHKHSTTQEPS 345
+S ++ST Q S
Sbjct: 835 NRLSVTIRNSTCQVDS 850
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,803
Number of Sequences: 37544
Number of extensions: 377168
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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