Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11d04
(686 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035631-1|AAH35631.1| 335|Homo sapiens solute carrier family 3... 88 3e-17
AK095227-1|BAC04504.1| 342|Homo sapiens protein ( Homo sapiens ... 88 3e-17
AF331643-1|AAL32175.1| 335|Homo sapiens chromosome 17 open read... 88 3e-17
U03495-1|AAA21325.1| 450|Homo sapiens transcription factor LSF-... 31 5.1
U03494-1|AAA21324.1| 502|Homo sapiens transcription factor LSF ... 31 5.1
M57609-1|AAA52564.1| 1596|Homo sapiens DNA-binding protein protein. 31 5.1
BC117168-1|AAI17169.1| 1580|Homo sapiens GLI-Kruppel family memb... 31 5.1
BC113616-1|AAI13617.1| 1580|Homo sapiens GLI-Kruppel family memb... 31 5.1
BC003634-1|AAH03634.1| 502|Homo sapiens transcription factor CP... 31 5.1
AJ250408-1|CAB59315.1| 1580|Homo sapiens GLI3 protein protein. 31 5.1
AC005026-1|AAP21869.1| 376|Homo sapiens unknown protein. 31 5.1
BC015183-1|AAH15183.1| 238|Homo sapiens alkB, alkylation repair... 30 8.9
AK095523-1|BAC04566.1| 224|Homo sapiens protein ( Homo sapiens ... 30 8.9
>BC035631-1|AAH35631.1| 335|Homo sapiens solute carrier family 39
(metal ion transporter), member 11 protein.
Length = 335
Score = 87.8 bits (208), Expect = 3e-17
Identities = 46/103 (44%), Positives = 57/103 (55%)
Frame = +3
Query: 99 MIEGYGAVXXXXXXXXXXXXXXXXXXXCVFFIRGKHRKLLDLSLGFAAGVMTAASYWSLL 278
M++G+ +V VF R++LD SLGFAAGVM AASYWSLL
Sbjct: 1 MLQGHSSVFQALLGTFFTWGMTAAGAALVFVFSSGQRRILDGSLGFAAGVMLAASYWSLL 60
Query: 279 KPAIEMCDTYGEDGKYAFVPVAGGFLCGAVFVYGTDRFLDYLG 407
PA+EM + G G +AF PVA GF GA FVY D + +LG
Sbjct: 61 APAVEMATSSGGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLG 103
>AK095227-1|BAC04504.1| 342|Homo sapiens protein ( Homo sapiens
cDNA FLJ37908 fis, clone CTONG1000010, weakly similar to
GUFA PROTEIN. ).
Length = 342
Score = 87.8 bits (208), Expect = 3e-17
Identities = 46/103 (44%), Positives = 57/103 (55%)
Frame = +3
Query: 99 MIEGYGAVXXXXXXXXXXXXXXXXXXXCVFFIRGKHRKLLDLSLGFAAGVMTAASYWSLL 278
M++G+ +V VF R++LD SLGFAAGVM AASYWSLL
Sbjct: 1 MLQGHSSVFQALLGTFFTWGMTAAGAALVFVFSSGQRRILDGSLGFAAGVMLAASYWSLL 60
Query: 279 KPAIEMCDTYGEDGKYAFVPVAGGFLCGAVFVYGTDRFLDYLG 407
PA+EM + G G +AF PVA GF GA FVY D + +LG
Sbjct: 61 APAVEMATSSGGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLG 103
>AF331643-1|AAL32175.1| 335|Homo sapiens chromosome 17 open reading
frame 26 protein.
Length = 335
Score = 87.8 bits (208), Expect = 3e-17
Identities = 46/103 (44%), Positives = 57/103 (55%)
Frame = +3
Query: 99 MIEGYGAVXXXXXXXXXXXXXXXXXXXCVFFIRGKHRKLLDLSLGFAAGVMTAASYWSLL 278
M++G+ +V VF R++LD SLGFAAGVM AASYWSLL
Sbjct: 1 MLQGHSSVFQALLGTFFTWGMTAAGAALVFVFSSGQRRILDGSLGFAAGVMLAASYWSLL 60
Query: 279 KPAIEMCDTYGEDGKYAFVPVAGGFLCGAVFVYGTDRFLDYLG 407
PA+EM + G G +AF PVA GF GA FVY D + +LG
Sbjct: 61 APAVEMATSSGGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLG 103
>U03495-1|AAA21325.1| 450|Homo sapiens transcription factor LSF-ID
protein.
Length = 450
Score = 30.7 bits (66), Expect = 5.1
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 441 KSKDSKEKLEDLEMMTALNRRPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNS 620
K K +EK+E +PS T+++T SP P IT + + + SH+S
Sbjct: 195 KQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE-----ITYVNNSPSPGFNSSHSS 249
Query: 621 LKIGE-NGEGDHR 656
+GE NG +H+
Sbjct: 250 FSLGEGNGSPNHQ 262
>U03494-1|AAA21324.1| 502|Homo sapiens transcription factor LSF
protein.
Length = 502
Score = 30.7 bits (66), Expect = 5.1
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 441 KSKDSKEKLEDLEMMTALNRRPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNS 620
K K +EK+E +PS T+++T SP P IT + + + SH+S
Sbjct: 246 KQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE-----ITYVNNSPSPGFNSSHSS 300
Query: 621 LKIGE-NGEGDHR 656
+GE NG +H+
Sbjct: 301 FSLGEGNGSPNHQ 313
>M57609-1|AAA52564.1| 1596|Homo sapiens DNA-binding protein protein.
Length = 1596
Score = 30.7 bits (66), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 382 VPYTNTAPHKNPPATGTNAYFPSSPYVS 299
+P+ +PH+NP A + + P PY++
Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYIN 198
>BC117168-1|AAI17169.1| 1580|Homo sapiens GLI-Kruppel family member
GLI3 (Greig cephalopolysyndactyly syndrome) protein.
Length = 1580
Score = 30.7 bits (66), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 382 VPYTNTAPHKNPPATGTNAYFPSSPYVS 299
+P+ +PH+NP A + + P PY++
Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYIN 198
>BC113616-1|AAI13617.1| 1580|Homo sapiens GLI-Kruppel family member
GLI3 (Greig cephalopolysyndactyly syndrome) protein.
Length = 1580
Score = 30.7 bits (66), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 382 VPYTNTAPHKNPPATGTNAYFPSSPYVS 299
+P+ +PH+NP A + + P PY++
Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYIN 198
>BC003634-1|AAH03634.1| 502|Homo sapiens transcription factor CP2
protein.
Length = 502
Score = 30.7 bits (66), Expect = 5.1
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 441 KSKDSKEKLEDLEMMTALNRRPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNS 620
K K +EK+E +PS T+++T SP P IT + + + SH+S
Sbjct: 246 KQKTDREKMEKRTPHEKEKYQPSYETTILTECSPWPE-----ITYVNNSPSPGFNSSHSS 300
Query: 621 LKIGE-NGEGDHR 656
+GE NG +H+
Sbjct: 301 FSLGEGNGSPNHQ 313
>AJ250408-1|CAB59315.1| 1580|Homo sapiens GLI3 protein protein.
Length = 1580
Score = 30.7 bits (66), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 382 VPYTNTAPHKNPPATGTNAYFPSSPYVS 299
+P+ +PH+NP A + + P PY++
Sbjct: 171 LPFIRISPHRNPAAASESPFSPPHPYIN 198
>AC005026-1|AAP21869.1| 376|Homo sapiens unknown protein.
Length = 376
Score = 30.7 bits (66), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 382 VPYTNTAPHKNPPATGTNAYFPSSPYVS 299
+P+ +PH+NP A + + P PY++
Sbjct: 48 LPFIRISPHRNPTAASESPFSPPHPYIN 75
>BC015183-1|AAH15183.1| 238|Homo sapiens alkB, alkylation repair
homolog 8 (E. coli) protein.
Length = 238
Score = 29.9 bits (64), Expect = 8.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 425 DDQYHQKQRLEREIRRFGNDDRFEQATVGTDECRDDGIPAAC 550
D+Q QK R ++ FG + +E V D+ G+P C
Sbjct: 163 DNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDIC 204
>AK095523-1|BAC04566.1| 224|Homo sapiens protein ( Homo sapiens
cDNA FLJ38204 fis, clone FCBBF1000412. ).
Length = 224
Score = 29.9 bits (64), Expect = 8.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 425 DDQYHQKQRLEREIRRFGNDDRFEQATVGTDECRDDGIPAAC 550
D+Q QK R ++ FG + +E V D+ G+P C
Sbjct: 163 DNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDIC 204
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,210,020
Number of Sequences: 237096
Number of extensions: 1924547
Number of successful extensions: 4746
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4746
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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