Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d04
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 480 MMTALNRRPSVPTSVVTMESPQPAEFADCITNQHTAQRRRGHQSHNSLKIGENGEG 647
           + TA  ++ S P   + ++  +  +      +Q+  Q+  G Q HN     + GEG
Sbjct: 164 LQTADKKKASAPLQQLALQQQRLIQQLQITQSQYLLQQGLGLQGHNPSSGLQPGEG 219


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 450 DSKEKLEDLEMMTAL 494
           D ++KLEDLEM T L
Sbjct: 504 DKEKKLEDLEMGTPL 518


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 396 DYLGINSTNMMISITKSKDSKEKLEDLEMMTALN 497
           D +G+  T ++   T S DS+  L  +   TAL+
Sbjct: 275 DRVGLGITTVLTLSTISLDSRTDLPKVRYATALD 308


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 330 MHIFHLLHMYHTFLWL 283
           M +  +LH+ HT +WL
Sbjct: 214 MKMCDILHLRHTKIWL 229


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 612 HNSLKIGENGEGDHRDSIS 668
           H S K G N E + +DSIS
Sbjct: 442 HTSYKSGLNLEQEKKDSIS 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,262
Number of Sequences: 438
Number of extensions: 3614
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)