Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d02
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22TN5 Cluster: Cation channel family protein; n=2; Tet...    35   1.5  
UniRef50_A7QBG3 Cluster: Chromosome chr13 scaffold_74, whole gen...    35   2.0  
UniRef50_O87160 Cluster: WblD protein; n=1; Vibrio cholerae|Rep:...    33   4.6  
UniRef50_Q54SQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q22TN5 Cluster: Cation channel family protein; n=2;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1273

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -3

Query: 373 KYKQKKNLNIVKK*QRMVNKYGFLHGLIQNKINHYYLFFFSNL 245
           K K  KNLN ++K     N Y  +  L Q KIN   LFF++NL
Sbjct: 7   KQKNNKNLNRLQKCMIFYNLYNLIRLLPQFKINIELLFFYTNL 49


>UniRef50_A7QBG3 Cluster: Chromosome chr13 scaffold_74, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr13 scaffold_74, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 67

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 290 NKSMKKSILIDHSLLFFHYI*VFFLFIFFSRYVLFFIGINAQ 415
           NK  KK + I    LF  YI  + LFIF+  Y+ FF  I+ Q
Sbjct: 15  NKKKKKDLFIYRGCLFLIYI--YILFIFYLYYIYFFFRISHQ 54


>UniRef50_O87160 Cluster: WblD protein; n=1; Vibrio cholerae|Rep:
           WblD protein - Vibrio cholerae
          Length = 398

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = +2

Query: 269 IMINFILNKSMKKSILIDHSLLFFHYI*VFFLFIFFSRYVLFF 397
           I+ + IL K+ K SIL  +SLLFF    V FLF+F+S + +FF
Sbjct: 228 ILASSILIKN-KTSILFFYSLLFFV---VVFLFVFYSDFFVFF 266


>UniRef50_Q54SQ1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 720

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 251 RKKKQIIMINFILNK--SMKKSILIDHSLLFFHYI*VFFLFIFFSRYVLFF 397
           +KKK +    F  N   S++K  + D  L FF +   FF F FF  +  FF
Sbjct: 63  KKKKVVFSYKFGRNPTPSLEKHKIQDVCLFFFFFFFFFFFFFFFFAFFFFF 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,652,613
Number of Sequences: 1657284
Number of extensions: 9531426
Number of successful extensions: 23180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22914
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)