Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d02
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    26   4.2  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   4.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   4.2  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   5.5  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    25   7.3  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 30  YLPSYGQRRVNNGIHNYLLNILA 98
           Y P+YG R +N  I N +LN +A
Sbjct: 829 YSPAYGARPLNRVIQNQVLNPMA 851


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  YLPSYGQRRVNNGIHNYLLNILAHKL 107
           Y P+YG R +N  I   +LN +A K+
Sbjct: 742 YSPAYGARPLNRLIQKRILNTMAMKI 767


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 14  CTFFLLFAELWPASCQQWNSQLFIKYIG 97
           C F+ ++  +   SCQ W S L++K+ G
Sbjct: 293 CPFYKIW-HIRNTSCQSWPSPLYVKFNG 319


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  YLLNILAHKLSINWIIVSVGLLYF 149
           +LLN++A    I+WI ++V  L F
Sbjct: 385 FLLNVIAVSNQISWIFIAVSSLRF 408


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 406 DSNEKQHISGKKYKQKK 356
           +SNEK+ +S KKYKQKK
Sbjct: 158 ESNEKR-LSEKKYKQKK 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,742
Number of Sequences: 5004
Number of extensions: 45696
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)