Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11d02
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152...    29   4.3  
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621...    28   5.7  

>12_01_0203 +
           1520079-1520302,1522346-1522405,1522794-1523016,
           1523038-1523434,1523522-1523781,1523866-1524011,
           1524044-1524317,1524501-1525547
          Length = 876

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 14  CTFFLLFAELWPASCQQWN 70
           C FFL+   +W   CQ+W+
Sbjct: 273 CKFFLVLDNMWEEMCQEWS 291


>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
            24062258-24062381,24062442-24062485,24063601-24063734,
            24063822-24063905,24064100-24064390,24064713-24065045,
            24065145-24065389,24065644-24065910,24065997-24066157,
            24066253-24066569,24066665-24066946,24067024-24067325,
            24067398-24067488,24067796-24067849,24067963-24068039,
            24068159-24068318,24068653-24068737,24069029-24069238,
            24069344-24069732
          Length = 1444

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 335  FFHYI*VFFLFIFFSRYVLFFIGINAQFHV 424
            F++   +FF F++F+ Y +  +G+   +HV
Sbjct: 1307 FWYLFFMFFTFLYFTFYGMMAVGLTPSYHV 1336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,973
Number of Sequences: 37544
Number of extensions: 214500
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)