Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c20
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    26   8.2  
AF025453-5|AAY55851.1|  279|Caenorhabditis elegans Hypothetical ...    26   8.2  

>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 181 KDR-SRLPKWLQELGF*NINEKNKKTAVNVYRFMITL-SYKIILC*HRIRVSYD 336
           KDR S+   WLQEL   N +   K   + ++R M  L  YK++   H+  ++Y+
Sbjct: 654 KDRTSKDATWLQELNHINQSSPEKLVELIIHRLMRYLYMYKVV---HQFSLAYE 704


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 181 KDR-SRLPKWLQELGF*NINEKNKKTAVNVYRFMITL-SYKIILC*HRIRVSYD 336
           KDR S+   WLQEL   N +   K   + ++R M  L  YK++   H+  ++Y+
Sbjct: 654 KDRTSKDATWLQELNHINQSSPEKLVELIIHRLMRYLYMYKVV---HQFSLAYE 704


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 171 QTINALQLIPTIMKTT*CWYHYKKNC 94
           Q +N +  +PT ++   C Y+Y KNC
Sbjct: 243 QLMNFVCELPTTIRDPDCKYNYNKNC 268


>AF025453-5|AAY55851.1|  279|Caenorhabditis elegans Hypothetical
           protein C08F1.11 protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 196 LPKWLQELGF*NINEKNKKTAVNVYRFMITLSYKIILC*HRIRVSY 333
           LP   +E  F  IN K    ++ +Y F   L+   I C H I+ SY
Sbjct: 4   LPSSCEE--FQKINRKYVTLSLLIYNFYFNLALGTINCFHFIKASY 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,445,038
Number of Sequences: 27780
Number of extensions: 155058
Number of successful extensions: 356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)