Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c20
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 201 RKPTAIFVWHQTINALQL 148
           RKP  I  WH  +NA  L
Sbjct: 78  RKPLPIEPWHGVLNATVL 95


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 201 RKPTAIFVWHQTINALQL 148
           RKP  I  WH  +NA  L
Sbjct: 78  RKPLPIEPWHGVLNATVL 95


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 136 YGWYKLQSVDSLVPDKDRSRLPKWLQELGF*NINEKNKKTAVNVY 270
           Y W +L     +    D+   PKWLQ L     +  N     N Y
Sbjct: 631 YEWKELIPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWY 675


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 229 NINEKNKKTAVNVYRFMITLSYKI 300
           N+NEKN+    NV+   I   Y++
Sbjct: 65  NVNEKNQIMKSNVWLRFIWTDYQL 88


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 331 YDCVTWWKIC 360
           Y C  WWKIC
Sbjct: 486 YPCC-WWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 331 YDCVTWWKIC 360
           Y C  WWKIC
Sbjct: 539 YPCC-WWKIC 547


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 18 LLVTIWNASIKIIFENEF 71
          L   IW  ++ ++F N F
Sbjct: 3  LRCNIWTLAVNVLFVNSF 20


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 18 LLVTIWNASIKIIFENEF 71
          L   IW  ++ ++F N F
Sbjct: 3  LRCNIWTLAVNVLFVNSF 20


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 18 LLVTIWNASIKIIFENEF 71
          L   IW  ++ ++F N F
Sbjct: 3  LRCNIWTLAVNVLFVNSF 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,736
Number of Sequences: 438
Number of extensions: 1946
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)